Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00474 ATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGCCAATATGATTCTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTTACCTCTTATGATGAAGTTTATGAAAGTTTTGATTCAATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCTTATGGATTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCATTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGTACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTGCAGCAACTTGATTATGATCTAGTCCAGTGCCAGGCTCTAGTTCTGGCACCAACTAGGGAGCTCGCTCAACAAATAGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCACGTTGTAGTTGGAACACCTGGTCGTGTGTTTGATATGTTAAGGAGGCAGTCTCTTCGCCCAGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGAACACTCGAGATATAATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTCATTACAACTGATTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCCGAAAATTATCTTCATCGTATTGGTCGAAGTGGTCGATTTGGAAGAAAAGGTGTCGCCATCAATTTTGTTACAAACGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGAGGTCGACTTGATGACTATTCCACGTGCCAAAGAGTCAACATTTCGCAGCTCATGCAATGACCTTAGGTGA 933 42.66 MAGLAPEGSQFDSRQYDSKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYDLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVEVDLMTIPRAKESTFRSSCNDLR 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3530045 3537200 + Cp4.1LG17g04750.1 Cpe17g00474 483792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00474 310 PANTHER BNAA02G16100D PROTEIN 6 202 - -
Cpe17g00474 310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 101 302 IPR001650 -
Cpe17g00474 310 Gene3D - 10 222 IPR027417 -
Cpe17g00474 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 209 IPR027417 -
Cpe17g00474 310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 244 IPR014001 -
Cpe17g00474 310 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 202 - -
Cpe17g00474 310 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 201 294 - -
Cpe17g00474 310 SMART helicmild6 189 261 IPR001650 -
Cpe17g00474 310 SMART ultradead3 59 253 IPR014001 -
Cpe17g00474 310 PANTHER BNAA02G16100D PROTEIN 201 294 - -
Cpe17g00474 310 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cpe17g00474 310 CDD SF2_C_DEAD 198 270 - -
Cpe17g00474 310 Pfam DEAD/DEAH box helicase 65 205 IPR011545 GO:0003676|GO:0005524
Cpe17g00474 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 295 IPR027417 -
Cpe17g00474 310 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00363 Cpe-Chr11:1999303 Cpe17g00474 Cpe-Chr17:3530045 0 dispersed
Cpe17g00474 Cpe-Chr17:3530045 Cpe03g01722 Cpe-Chr3:13059769 1.04E-21 dispersed
Cpe12g00607 Cpe-Chr12:6047211 Cpe17g00474 Cpe-Chr17:3530045 0 wgd
Cpe17g00474 Cpe-Chr17:3530045 Cpe02g01732 Cpe-Chr2:14178581 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00474 K03257 - csv:101221456 394.815