Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00479 ATGATGAAAGGTAGTTTTTTGTCTCAACAACATCAACAACAACTACTCATGGATCAAACTTTGTCCAATTTGACTAACCCGACCCAATTTTTCTCTCCTCCTCCCCCGAAGCGGAAGCGGAATCTCGCGGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAAACGCTCATGGCGACGAATCGATTCGTGTGCGAGATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTACATAGAAGAGGGCATAATCTTCCATGGAAGCTGAAGCAGAGATCAAACAAGGAGGTGATAAAGAAGAAGGTGTATGTTTGTCCTGAGCCAAGCTGTGTTCACCATGATCCATCAAGAGCTCTTGGTGACCTCACAGGAATAAAGAAGCATTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCCGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAAGGAATATAAATGTGATTGTGGAACGCTTTTCTCGAGAGCTTTCTGTGATGCATTAGCGGATGAAAGTGCAAGATCAGCCATGACATTGAGCCCTCTAATTTCAAATTATAATAATTCACAAGAATTATTATTTAAACGAGGCTTCGGCGGCGGTGATAATAGCAACAATGACGACAACAATCTAAAAACGGAAATCCCGTCGTGGCTGCAGTCGGACGAAATCTTTGTCGGGAGTACCCACCAAACCCTAAACCCTAACCCTAATGGTTTAGTTCCTCCTTGTGTTTCGTCTCCTCATATATCAGCGACTGCGTTGCTTCAGAAAGCAGCTCAAATGGGTGCGACCATGAGTAGTGGCTCGATGGGAAGGACCCACGAGATGGTTCACGTGTCTACAGGTAATTATGGGGATATGGGTATAAGGTCACGTGAAGGAGGAATGGGCGTCAGTTGTAGTAGTAGTAGTTGTTGTACTGATTATGGGAATAAAGCTGCGGCGGTTTCTGCGGCGGTTTCTGCCACTGCTACGCCTTCTGGGCCGACCACTTTTCTTCATGACATGATAAATTCCCTTGCTTCTGCTTCTCATCCTTTCCATCAAGATTCCTCCGCCTTTAACGCCGCCGCATTCGCCGCCATGCACCACCACACCGCCGCCGGAAGAAGCGACGGTTTAACCAGAGATTTCTTGGGGCTCCGCCCACTTTCCCATGGAGATATTCTAAGCATTACCGGTTTTGGAAACTGTATTGTTCCCAATTCTGCCACTCTTCAGAGCCAAACCCAGAAGCCTTGGCAGGGTTAG 1308 46.02 MMKGSFLSQQHQQQLLMDQTLSNLTNPTQFFSPPPPKRKRNLAGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRAFCDALADESARSAMTLSPLISNYNNSQELLFKRGFGGGDNSNNDDNNLKTEIPSWLQSDEIFVGSTHQTLNPNPNGLVPPCVSSPHISATALLQKAAQMGATMSSGSMGRTHEMVHVSTGNYGDMGIRSREGGMGVSCSSSSCCTDYGNKAAAVSAAVSATATPSGPTTFLHDMINSLASASHPFHQDSSAFNAAAFAAMHHHTAAGRSDGLTRDFLGLRPLSHGDILSITGFGNCIVPNSATLQSQTQKPWQG 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3563821 3566267 + Cp4.1LG17g04710.1 Cpe17g00479 483797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00479 435 MobiDBLite consensus disorder prediction 24 50 - -
Cpe17g00479 435 Gene3D Classic Zinc Finger 121 192 - -
Cpe17g00479 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Cpe17g00479 435 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Cpe17g00479 435 Gene3D Classic Zinc Finger 45 114 - -
Cpe17g00479 435 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 22 416 - -
Cpe17g00479 435 SMART c2h2final6 143 163 IPR013087 -
Cpe17g00479 435 SMART c2h2final6 66 88 IPR013087 -
Cpe17g00479 435 SMART c2h2final6 108 138 IPR013087 -
Cpe17g00479 435 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Cpe17g00479 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00479 Cpe-Chr17:3563821 Cpe03g00175 Cpe-Chr3:867681 5.98E-104 dispersed
Cpe12g00615 Cpe-Chr12:6100750 Cpe17g00479 Cpe-Chr17:3563821 0 wgd
Cpe17g00479 Cpe-Chr17:3563821 Cpe02g01726 Cpe-Chr2:14127921 2.88E-118 wgd
Cpe17g00479 Cpe-Chr17:3563821 Cpe03g01066 Cpe-Chr3:8815274 5.74E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50801 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00479 K25870 - csv:101220200 577.785