Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00481 | ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATTTTCCAATCCGACGTCCGATCCCTCGATCCTGTGGGCGGATGTTACCGCATCATTCGTGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAACTCGAGATCGTGCTTCATCAATTGGCGATTTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCTGCGATTCTGGACGCCGATCATCCTATGAGTGGAATCGAGCACCAATTTGTGGAGGAAGGATTTGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGATGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTTTTCCTTCAAATCCTCTGTTCATGATTTTGATCATATCAATATTCATTATCATCATCAACAATTCGTTAAGTTTCATCCGGATCATCATCAGTTTCTTCATAATAACAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCAATGCAAAATGATCAAGATGGAGAGGTTGAAGGCGGCGTTCAAATACCAATTATCACTCCTACTGACCATGTTGATCAAAATGTTGTAAGCTTATAA | 888 | 49.21 | MTSIHHHHPPPHHHPPPHHHHHLSKSTSAVSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAAILDADHPMSGIEHQFVEEGFVIGENENAESLDDEAADVWGIQASQISPCFSFKSSVHDFDHINIHYHHQQFVKFHPDHHQFLHNNSEEEAGMVEIDNVILKEDSEPMQNDQDGEVEGGVQIPIITPTDHVDQNVVSL | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 3574220 | 3576431 | + | Cp4.1LG17g04740.1 | Cpe17g00481 | 483799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00481 | 295 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 249 | - | - | |
Cpe17g00481 | 295 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe17g00481 | 295 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cpe17g00481 | 295 | Pfam | Lateral organ boundaries (LOB) domain | 42 | 137 | IPR004883 | - | |
Cpe17g00481 | 295 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 22 | 36 | 249 | - | - | |
Cpe17g00481 | 295 | ProSiteProfiles | LOB domain profile. | 41 | 142 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe17g00481 | Cpe-Chr17:3574220 | Cpe13g00936 | Cpe-Chr13:7900922 | 3.08E-30 | dispersed | |
Cpe11g00075 | Cpe-Chr11:401877 | Cpe17g00481 | Cpe-Chr17:3574220 | 2.40E-33 | transposed | |
Cpe12g00616 | Cpe-Chr12:6110906 | Cpe17g00481 | Cpe-Chr17:3574220 | 3.56E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50802 | PF03195 | LOB | 1.20E-35 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00481 | - | - | csv:105436286 | 343.199 |