Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00481 ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATTTTCCAATCCGACGTCCGATCCCTCGATCCTGTGGGCGGATGTTACCGCATCATTCGTGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAACTCGAGATCGTGCTTCATCAATTGGCGATTTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCTGCGATTCTGGACGCCGATCATCCTATGAGTGGAATCGAGCACCAATTTGTGGAGGAAGGATTTGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGATGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTTTTCCTTCAAATCCTCTGTTCATGATTTTGATCATATCAATATTCATTATCATCATCAACAATTCGTTAAGTTTCATCCGGATCATCATCAGTTTCTTCATAATAACAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCAATGCAAAATGATCAAGATGGAGAGGTTGAAGGCGGCGTTCAAATACCAATTATCACTCCTACTGACCATGTTGATCAAAATGTTGTAAGCTTATAA 888 49.21 MTSIHHHHPPPHHHPPPHHHHHLSKSTSAVSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAAILDADHPMSGIEHQFVEEGFVIGENENAESLDDEAADVWGIQASQISPCFSFKSSVHDFDHINIHYHHQQFVKFHPDHHQFLHNNSEEEAGMVEIDNVILKEDSEPMQNDQDGEVEGGVQIPIITPTDHVDQNVVSL 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3574220 3576431 + Cp4.1LG17g04740.1 Cpe17g00481 483799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00481 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 249 - -
Cpe17g00481 295 MobiDBLite consensus disorder prediction 1 25 - -
Cpe17g00481 295 MobiDBLite consensus disorder prediction 1 33 - -
Cpe17g00481 295 Pfam Lateral organ boundaries (LOB) domain 42 137 IPR004883 -
Cpe17g00481 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 36 249 - -
Cpe17g00481 295 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00481 Cpe-Chr17:3574220 Cpe13g00936 Cpe-Chr13:7900922 3.08E-30 dispersed
Cpe11g00075 Cpe-Chr11:401877 Cpe17g00481 Cpe-Chr17:3574220 2.40E-33 transposed
Cpe12g00616 Cpe-Chr12:6110906 Cpe17g00481 Cpe-Chr17:3574220 3.56E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50802 PF03195 LOB 1.20E-35 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00481 - - csv:105436286 343.199