Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00482 ATGAAAACTGCTGAAATTTCCTCTGCGATTGCGACTCTGATGGGGTTTCGATCGCTGTTTCTGCTTTTGGGGATTTGTTTTGCTGTTCGTTCTTGCTCTGTCTGTGAATCTGCAGTTATCGCCCCGAACGGGCGAAGCCAAGCGCGTTCTTCGCTCACAGTTATCGTCCCGAACGGTCGAAACGAAGTGCATTCTTCGCTCACAGCGACTCGATTAGATGATTCGAGTAGAGCTCCTAGCATTGCACTTCCACCTACCGTGCCTGCTAAGAAATGGGGGCACGGTCATGAATTTCGCCATTCAAGAAGGAAGTTCAGAAACAATGCTCCACGGCGTGGTTATCGTGCATCGACTCCGGAGAGTGGTCAGCAAGGCCGTGCTGCTGTCTCTCCAATTCAATCACCATTACCATCTGCAACGAGAGGAAGGTCGCCGAGACCTGCGCCATCGCCAACGATTCCACCGAACCACTATTATATGCCCATTCCTGCTCCTACAATTTCTCCTATGGGTTCTTACAAGAAGAGGAAGAAGAGCATGCCACCATCACAAGTTATGATGCTACCACCCCCACCTCCTAATGGGGATTGTGCGATATCATGTACCGAACCACTGACCTATACACCTCCCGGGACGTTGTGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGTCTTGATGTTGCAATATACACGTTTTTCCCTTTGGTTTCGGAGCTGGCAGAGGAAATTGCAGACAGTATTGGTCTGAACCATAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGTCAGCAGTTGGAAAAAACGACCGTCCTCATCAACTTGGTTCCGAGAGGACCGAAATTCAATGATACCATGGCCTTTTCGATATATCAGAAGTTTTGGCATAGAAAAATATCCATTAACGCTTCGTTATTTGGTCGATATCAAGTCCTGAATGTCAAATATCCAGGTCTTCCGCCGTCTCCTCCGTTACCTCCTTCAAGTACTTCATCCATTAACGATGGCTTGAACACGAGCAATACTAATATTGGAAATGCCATAAAACCTTTGGGAGTTGACGTGCCAAGAAGAAGGAAAGAAGGGCTTAGCGGAAACATGATCGCCGTGATTACTATATCGTCGTTCACTGCCTTTGTTATGTGTGTTGGACTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTTTGCACATCAGGCAGCACAAGTTCCACAAAACTTGATAGCTTCACCTACAAAACCATCAGGCACTGCTGGAGTAATGATGGCTGTAAGTGAACCTGGTTCTTCATCCCTGCCTCTCGATGCCGATCCTATGACGTATATAGGAGCTGCAAAGAACTTCACCTTGAAAGATATGAAGAAAGCTACCGACAACTTCGATGTTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGTAGTTTGGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTCAAACGACATAATCAACACGGTATTCGGGAATTCTTGGCTGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAATTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTTGTTTATGAATTGGTTCCGAATGGAAGCGTCGAATCGCATTTACATGGCATTGACAAGTTAACTGGTCCTCTTGACTGGGATGCTCGGATGAAGATTGCCCTCGGTGCTGCTCGTGGCCTAGCCTATTTGCACGAAGACTCTAATCCTCGAGTTATTCATCGAGATTTCAAAGCTAGCAACATCTTTACTTCATCCATTAACGATGGCTTGAACACGAGCAATACTAATATTGGAAATGCCATAAAACCTTTGGGAGTTGACGTGCCAAGAAGAAGGAAAGAAGGGCTTAGCGGAAACATGATCGCCGTGATTACTATATCGTCGTTCACTGCCTTTGTTATGTGTGTTGGACTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTTTGCACATCAGGCAGCACAAGTTCCACAAAACTTGATAGCTTCACCTACAAAACCATCAGGCACTGCTGGAGTAATGATGGCTGTAAGTGAACCTGGTTCTTCATCCCTGCCTCTCGATGCCGATCCTATGACGTATATAGGAGCTGCAAAGAACTTCACCTTGAAAGATATGAAGAAAGCTACCGACAACTTCGATGTTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGTAGTTTGGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTCAAACGACATAATCAACACGGTATTCGGGAATTCTTGGCTGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAATTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTTGTTTATGAATTGGTTCCGAATGGAAGCGTCGAATCGCATTTACATGGCATTGACAAGTTAACTGGTCCTCTTGACTGGGATGCTCGGATGAAGATTGCCCTCGGTGCTGCTCGTGGCCTAGCCTATTTGCACGAAGACTCTAATCCTCGAGTTATTCATCGAGATTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACAGCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACCCATGTCATGGGAACTTTTGGTTATCTAGCTCCGGAGTATGCAATGACGGGCCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTTGTTCTTCTCGAGCTACTTACGGGAAGAAAACCAGTTGACTTGTTGCTTCCACCGGGGCAAGAAAATCTTGTTGCTTGGGCTCGACCGCTTCTAACGAGCAAGGAGGGGTTAGATGTAATTACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCTGCAATTGCTTCTATGTGTGTGCAACCCGAAGTGTCTCACAGACCATTTATGGGCGAGGTTGTTCAAGCTCTAAAGCTTGTTTGCAATGAGTTCGAAGAGACAAATGAGGCAGGTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATCTCAGGGGAAATACTAAACGCTACCGACACCTTGCACCCGTTTCCTTCAGAAAAAGAGACGAATGTAGGACTATCGGCATCGGATTTGATCAGCGCATCTGCAAGATTTGAAGGACAGGAATTAGTTTCCTTGAGATGGCATACATCAAACTCAGAACCCTTGAAAATGGGAAGGAAGAGGCAGTTCTGGCAGAAACTAAGAAGTTTATCACGAGGCAGCATCAGTGAACATGGCTTTTCTTCTAAATTTTGGCCTGGATTTCGTTAG 3363 45.41 MKTAEISSAIATLMGFRSLFLLLGICFAVRSCSVCESAVIAPNGRSQARSSLTVIVPNGRNEVHSSLTATRLDDSSRAPSIALPPTVPAKKWGHGHEFRHSRRKFRNNAPRRGYRASTPESGQQGRAAVSPIQSPLPSATRGRSPRPAPSPTIPPNHYYMPIPAPTISPMGSYKKRKKSMPPSQVMMLPPPPPNGDCAISCTEPLTYTPPGTLCGCVWPIQVKISLDVAIYTFFPLVSELAEEIADSIGLNHSQVRIMGADAASQQLEKTTVLINLVPRGPKFNDTMAFSIYQKFWHRKISINASLFGRYQVLNVKYPGLPPSPPLPPSSTSSINDGLNTSNTNIGNAIKPLGVDVPRRRKEGLSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVFAHQAAQVPQNLIASPTKPSGTAGVMMAVSEPGSSSLPLDADPMTYIGAAKNFTLKDMKKATDNFDVARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNIFTSSINDGLNTSNTNIGNAIKPLGVDVPRRRKEGLSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVFAHQAAQVPQNLIASPTKPSGTAGVMMAVSEPGSSSLPLDADPMTYIGAAKNFTLKDMKKATDNFDVARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLLLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEAGSRSYSRDELLSYMDSKFGGISGEILNATDTLHPFPSEKETNVGLSASDLISASARFEGQELVSLRWHTSNSEPLKMGRKRQFWQKLRSLSRGSISEHGFSSKFWPGFR 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3577916 3585132 + Cp4.1LG17g04730.1 Cpe17g00482 483800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00482 1120 CDD STKc_IRAK 731 999 - -
Cpe17g00482 1120 MobiDBLite consensus disorder prediction 117 140 - -
Cpe17g00482 1120 ProSiteProfiles Protein kinase domain profile. 725 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00482 1120 MobiDBLite consensus disorder prediction 95 110 - -
Cpe17g00482 1120 PANTHER OS01G0750732 PROTEIN 67 594 - -
Cpe17g00482 1120 Gene3D Transferase(Phosphotransferase) domain 1 801 1021 - -
Cpe17g00482 1120 SUPERFAMILY Protein kinase-like (PK-like) 705 998 IPR011009 -
Cpe17g00482 1120 PANTHER OS01G0750732 PROTEIN 597 1119 - -
Cpe17g00482 1120 Gene3D Transferase(Phosphotransferase) domain 1 537 682 - -
Cpe17g00482 1120 PANTHER OS01G0750732 PROTEIN 597 1119 - -
Cpe17g00482 1120 Pfam Protein tyrosine and serine/threonine kinase 464 596 IPR001245 GO:0004672|GO:0006468
Cpe17g00482 1120 Pfam Protein tyrosine and serine/threonine kinase 728 998 IPR001245 GO:0004672|GO:0006468
Cpe17g00482 1120 Gene3D Phosphorylase Kinase; domain 1 432 536 - -
Cpe17g00482 1120 Gene3D Phosphorylase Kinase; domain 1 696 800 - -
Cpe17g00482 1120 MobiDBLite consensus disorder prediction 142 161 - -
Cpe17g00482 1120 MobiDBLite consensus disorder prediction 71 161 - -
Cpe17g00482 1120 ProSiteProfiles Protein kinase domain profile. 461 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00482 1120 PANTHER OS01G0750732 PROTEIN 67 594 - -
Cpe17g00482 1120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Cpe17g00482 1120 ProSitePatterns Protein kinases ATP-binding region signature. 731 753 IPR017441 GO:0005524
Cpe17g00482 1120 SUPERFAMILY Protein kinase-like (PK-like) 441 595 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00310 Cpe-Chr7:2015264 Cpe17g00482 Cpe-Chr17:3577916 3.18E-35 dispersed
Cpe12g00766 Cpe-Chr12:6980072 Cpe17g00482 Cpe-Chr17:3577916 9.56E-33 dispersed
Cpe17g00482 Cpe-Chr17:3577916 Cpe16g00727 Cpe-Chr16:7384870 4.68E-41 dispersed
Cpe17g00628 Cpe-Chr17:5144289 Cpe17g00482 Cpe-Chr17:3577916 2.12E-32 dispersed
Cpe03g00926 Cpe-Chr3:6322934 Cpe17g00482 Cpe-Chr17:3577916 3.19E-09 transposed
Cpe12g00619 Cpe-Chr12:6125047 Cpe17g00482 Cpe-Chr17:3577916 6.64E-15 wgd
Cpe17g00482 Cpe-Chr17:3577916 Cpe18g00357 Cpe-Chr18:4971009 3.46E-23 wgd
Cpe17g00482 Cpe-Chr17:3577916 Cpe04g01053 Cpe-Chr4:9286957 5.69E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62947 PF07714 PK_Tyr_Ser-Thr 3.20E-47 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00482 - - cpep:111778754 2165.58