Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00494 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTTATCAATGCTGATGAGGTTGCAAGAGTGACTTCTGTGAAGGAGTTGAGTGGGCAAATTTGCCAGATCTGTGGAGATGAGCTAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGTGTTGAAGGTGATGAAGAAGAAGACGATATCGATGATCTTGAGAATGAATTTGACATTGCAAACAAGGATCCTAACAGTGTATCTGATGCAATGCTCTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATACTAATGGTTCTGGAAATATGGCTTCCGACCTCAACTCCTCGTCCGTCCCCACCGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATCATTCCTCCGTTTATTAGCCGTGGGAAAAAAGTCCATCCAGCACCATTCACTGATTCCATGTCTGTGACTGATGTTGTAAGTGTTGATGTTGCAGCTAATCCAAGGCCGATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACGGTTGCGTGGAAAGAAAGAATGGAGGAATGGCGGAAGAAACAAAATGAAAGGCTTCAAGTAATTAAGCACGAGGGTGGAGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCGATCTCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTCTCCTTCATCCTGTCAACGAGGCATATGGGCTGTGGTTAACATCAGTTATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCGATTGTCCGAGAAACTTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTATGTCAGTACTGTGGATCCATTGAAGGAGCCTCCTCTCATCACGGCAAACACCGTCCTGTCTATTCTTGCCGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCGGACGACGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCCGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATCGAACCTCGGGCCCCAGAATGGTATTTTGCCCTGAAGGTCGACTATTTGAAAGATAAAGTTGATCCAACCTTCATCCGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTCAAAGTTCGAATCAATGGGCTCGTTGCCATGGCTCAAAAAGTTCCTGAAGACGGGTGGACAATGCAGGACGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTTCAAACGGGGTTCGTGATTTGGAGGGAAATGAATTACCTCGTTTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTCGATCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTATCGGCAATCATTTCAAACGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCGCTTAGAGAAGCAATGTGCTTCATGATGGACCCGATTTCGGGAAAAAGAATATGCTATGTACAGTTTCCACAAAGATTTGACGGGATTGATAGGCACGATCGATACTCGAATCGCAATGTTGTGTTTTTTGATATCAACATGAAAGGATTGGACGGTATTCAAGGACCGATTTACGTCGGAACGGGATGTGTCTTCAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAATTGTCTTCCAAAATGGTGCTGCTGCTGCTGTGGAACTAGAACGAAGACGAAAACAAAGACCAGCGATAAAAAGAAGTTAAAAACCAAAGATACGTCGAAACAGATTCACGCGCTCGAAAATATCGAGGAAGGAATTGAAGGAATAGATAATGAGAAATCGTCTCTGATGCCCCAAGTTAAGTTCGAGAAGAAGTTCGGTCAATCGCCAGCCTTCATTGCTTCGACACTTATGGAAGACGGTGGCGTGCCCGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCATGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTCGGGTGGATATATGGGTCCGTTACAGAGGATATTTTAACAGGTTTTAAGATGCATTGCCATGGATGGAGATCAGTTTACTGCATTCCTAAAAGGCCAGCGTTCAAGGGTTCGGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGATGGGCTCTCGGGTCTGTTGAAATTCTGTTGAGCAGGCACTGTCCAATATGGTACGGCTATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCTGTTGTTTATCCATTGACGTCGGTTCCACTGATTGCGTATTGTACGCTACCAGCTGTCTGCCTGCTTACAGGGCAGTTCATTGTCCCGGAGCTAAGCAATTATGCCAGTATCATCTTCATGGCTCTTTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGCGTCGGGATCCACGATTGGTGGAGAAACGAGCAATTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACGGTCACATCGAAAGGAGGAGACGATGGCGAGTTCTCCGAGCTTTACCTCTTCAAGTGGACGTCGTTATTAGTCCCTCCATTGACGTTACTGATCATAAACATCATCGGAGTTGTCGTCGGAATTTCAGACGCCATCAACAACGGTTACGACTCATGGGGACCACTCATCGGTAAGCTATTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTATGGTCAATTCTTCTCTCGTCGATTCTATCGCTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTCTTGGAAGTTTGCGGGTTAAACTGTGACTAA 3297 45.8 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSVSDAMLYPHLAVGRGSHTNGSGNMASDLNSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSVTDVVSVDVAANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRLLHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKDKVDPTFIRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGSNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRTKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFSELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCD 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3890362 3896570 - Cp4.1LG17g04910.1 Cpe17g00494 483812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00494 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cpe17g00494 1098 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1097 - -
Cpe17g00494 1098 Pfam Cellulose synthase 372 1086 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe17g00494 1098 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cpe17g00494 1098 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cpe17g00494 1098 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cpe17g00494 1098 SUPERFAMILY Nucleotide-diphospho-sugar transferases 386 881 IPR029044 -
Cpe17g00494 1098 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 521 664 IPR029044 -
Cpe17g00494 1098 PANTHER CELLULOSE SYNTHASE 1 1097 - -
Cpe17g00494 1098 Coils Coil 99 119 - -
Cpe17g00494 1098 SUPERFAMILY RING/U-box 28 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00946 Cpe-Chr2:7956603 Cpe17g00494 Cpe-Chr17:3890362 0 dispersed
Cpe17g00494 Cpe-Chr17:3890362 Cpe19g00547 Cpe-Chr19:4637473 0 dispersed
Cpe17g00494 Cpe-Chr17:3890362 Cpe10g00358 Cpe-Chr10:2114592 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00494 K10999 - csv:101214061 2093.93