Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00518 | ATGGATTATTCGAACCGGGATGGATACGGGTCGAGAGTTGCCACGACAAACATGACGTCGCCGGTGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAATTCAAATTCTCACTTCTTCAACTCAGTTCAAGATCTCCCAATCAGCCCTCCATTGACAAGCTTTGCAACATCCAAAGACATGGATGCTATTGCGCCCTATGGATTCGACGACGGTAAATCGACGTCGGTTACACCGTGCTCTCTCGAGTCATTGGACTGCTTGCTTTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGATAATGATGGATCAGTGTCAATGATCTTAACAGATTACACAAATTTATGGAACTTTGGAAGCAATGCTGCAACTACAAAGAGAACCCATCAAGAATCTACAGAGTACTCTGTTTTTTCCAACACCATCAAGAATCTCTCTGATTCAACTTCAAACAGTGGAGGGTTTAGGATCATAACAGATCAAAATCAACCAAAATCAAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTTCAGCAATCATGTTCATCAGGATCATCATGTATTGATCAAGAGCCAGACCCAGAAGCCATAGCACAGATGAAGGAAATGATATACAGAGCAGCAGCCTTGAGGCCAGTGAATTTGGGGGTAGAAGGGATAGAAAAGCCCAAAAGGAAGAACGTGAGGATCTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTATTGCAAAGGCTTGTTCCTGGTGGGAACAAGATGGATACTGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGATTGAATCTTTGAACTGCCCTTCAACTAGCTTAGCTTTTTCTTTCAACCCATCTTTTCCCATACAATCATCTTCATCATTATCCCATAACCAATTCCCCCAAAACTGA | 1023 | 41.94 | MDYSNRDGYGSRVATTNMTSPVSFWSNYQQGVEERFMISNSNSHFFNSVQDLPISPPLTSFATSKDMDAIAPYGFDDGKSTSVTPCSLESLDCLLSATNSNTDTSVEDNDGSVSMILTDYTNLWNFGSNAATTKRTHQESTEYSVFSNTIKNLSDSTSNSGGFRIITDQNQPKSKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAALRPVNLGVEGIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSTSLAFSFNPSFPIQSSSSLSHNQFPQN | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4328574 | 4329596 | + | Cp4.1LG17g05170.1 | Cpe17g00518 | 483836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00518 | 340 | MobiDBLite | consensus disorder prediction | 181 | 202 | - | - | |
Cpe17g00518 | 340 | Coils | Coil | 282 | 309 | - | - | |
Cpe17g00518 | 340 | PANTHER | TRANSCRIPTION FACTOR BHLH87 | 22 | 336 | - | - | |
Cpe17g00518 | 340 | SMART | finulus | 249 | 298 | IPR011598 | GO:0046983 | |
Cpe17g00518 | 340 | Pfam | Helix-loop-helix DNA-binding domain | 253 | 292 | IPR011598 | GO:0046983 | |
Cpe17g00518 | 340 | Gene3D | - | 248 | 311 | IPR036638 | GO:0046983 | |
Cpe17g00518 | 340 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 243 | 292 | IPR011598 | GO:0046983 | |
Cpe17g00518 | 340 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 248 | 304 | IPR036638 | GO:0046983 | |
Cpe17g00518 | 340 | MobiDBLite | consensus disorder prediction | 157 | 204 | - | - | |
Cpe17g00518 | 340 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 22 | 336 | IPR045843 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe17g00518 | Cpe-Chr17:4328574 | Cpe19g00534 | Cpe-Chr19:4530320 | 4.81E-40 | dispersed | |
Cpe12g00638 | Cpe-Chr12:6249699 | Cpe17g00518 | Cpe-Chr17:4328574 | 6.34E-158 | wgd | |
Cpe17g00518 | Cpe-Chr17:4328574 | Cpe02g01708 | Cpe-Chr2:14015822 | 1.43E-44 | wgd | |
Cpe17g00518 | Cpe-Chr17:4328574 | Cpe03g01084 | Cpe-Chr3:8961850 | 2.52E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50805 | PF00010 | HLH | 6.30E-06 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00518 | - | - | csv:101207907 | 475.322 |