Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00518 ATGGATTATTCGAACCGGGATGGATACGGGTCGAGAGTTGCCACGACAAACATGACGTCGCCGGTGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAATTCAAATTCTCACTTCTTCAACTCAGTTCAAGATCTCCCAATCAGCCCTCCATTGACAAGCTTTGCAACATCCAAAGACATGGATGCTATTGCGCCCTATGGATTCGACGACGGTAAATCGACGTCGGTTACACCGTGCTCTCTCGAGTCATTGGACTGCTTGCTTTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGATAATGATGGATCAGTGTCAATGATCTTAACAGATTACACAAATTTATGGAACTTTGGAAGCAATGCTGCAACTACAAAGAGAACCCATCAAGAATCTACAGAGTACTCTGTTTTTTCCAACACCATCAAGAATCTCTCTGATTCAACTTCAAACAGTGGAGGGTTTAGGATCATAACAGATCAAAATCAACCAAAATCAAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTTCAGCAATCATGTTCATCAGGATCATCATGTATTGATCAAGAGCCAGACCCAGAAGCCATAGCACAGATGAAGGAAATGATATACAGAGCAGCAGCCTTGAGGCCAGTGAATTTGGGGGTAGAAGGGATAGAAAAGCCCAAAAGGAAGAACGTGAGGATCTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTATTGCAAAGGCTTGTTCCTGGTGGGAACAAGATGGATACTGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGATTGAATCTTTGAACTGCCCTTCAACTAGCTTAGCTTTTTCTTTCAACCCATCTTTTCCCATACAATCATCTTCATCATTATCCCATAACCAATTCCCCCAAAACTGA 1023 41.94 MDYSNRDGYGSRVATTNMTSPVSFWSNYQQGVEERFMISNSNSHFFNSVQDLPISPPLTSFATSKDMDAIAPYGFDDGKSTSVTPCSLESLDCLLSATNSNTDTSVEDNDGSVSMILTDYTNLWNFGSNAATTKRTHQESTEYSVFSNTIKNLSDSTSNSGGFRIITDQNQPKSKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAALRPVNLGVEGIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSTSLAFSFNPSFPIQSSSSLSHNQFPQN 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4328574 4329596 + Cp4.1LG17g05170.1 Cpe17g00518 483836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00518 340 MobiDBLite consensus disorder prediction 181 202 - -
Cpe17g00518 340 Coils Coil 282 309 - -
Cpe17g00518 340 PANTHER TRANSCRIPTION FACTOR BHLH87 22 336 - -
Cpe17g00518 340 SMART finulus 249 298 IPR011598 GO:0046983
Cpe17g00518 340 Pfam Helix-loop-helix DNA-binding domain 253 292 IPR011598 GO:0046983
Cpe17g00518 340 Gene3D - 248 311 IPR036638 GO:0046983
Cpe17g00518 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Cpe17g00518 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 304 IPR036638 GO:0046983
Cpe17g00518 340 MobiDBLite consensus disorder prediction 157 204 - -
Cpe17g00518 340 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 22 336 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00518 Cpe-Chr17:4328574 Cpe19g00534 Cpe-Chr19:4530320 4.81E-40 dispersed
Cpe12g00638 Cpe-Chr12:6249699 Cpe17g00518 Cpe-Chr17:4328574 6.34E-158 wgd
Cpe17g00518 Cpe-Chr17:4328574 Cpe02g01708 Cpe-Chr2:14015822 1.43E-44 wgd
Cpe17g00518 Cpe-Chr17:4328574 Cpe03g01084 Cpe-Chr3:8961850 2.52E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50805 PF00010 HLH 6.30E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00518 - - csv:101207907 475.322