Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe17g00525 | ATTGTTTATATCATAATCTTACGCATCAACTCATTAGATGAGAGCCCAAAAATCATCAAAATCGACACCTATCGAACTCGATCAAAGTCTCGTAGGTACATCTCTACATTATCTGATTATGGAGGAGACGAAACAGCACCTCTCCAACCAATCTCTTCGTTGTTGCCATGTCTAAATCGACCTCACCCGTTTACACTTGATTGTCACAATGTGCATCAAGACTTCGAATGGTACTTGATGGACGAAGACTACAAGTTCCCTACAGCTCACAGTATGTCCCAACTATCAAATTCATTCGTCTCCACCAACATAGAGAAAAACAGAGTACCCATTGGAGGATTTCGCCATTTTCTTGAATTCCAGAAGGTGGGGGTTGGTGGATCGTCATTTTTCTTGTGGGTTTTCTTCTTTCTCTCTCTAAACATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTGGTTTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTGGTTAAGTTGCAGGCTGTCGTTCGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCTCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGTTTTGATGAAATAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTACGAAACCTCCATCAACTCATTGGACGAGAGCCCAAAAATCGTCGAAATCGACACGTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCACTTCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACGTTTACGCTTGATTGTCACAATGTGCATCGAGACTTCGAATGGTGTTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCAACGAACATGTCAGTCACCCCATCAAAGAGCGTCTGCGGGGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACA | 1401 | 45.32 | IVYIIILRINSLDESPKIIKIDTYRTRSKSRRYISTLSDYGGDETAPLQPISSLLPCLNRPHPFTLDCHNVHQDFEWYLMDEDYKFPTAHSMSQLSNSFVSTNIEKNRVPIGGFRHFLEFQKVGVGGSSFFLWVFFFLSLNMGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERFDEIRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSNAETKQPNSART | 467 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 4376627 | 4379990 | - | Cp4.1LG17g05290.1 | Cpe17g00525 | 483843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe17g00525 | 467 | ProSiteProfiles | IQ motif profile. | 209 | 236 | IPR000048 | GO:0005515 | |
| Cpe17g00525 | 467 | Pfam | Protein of unknown function (DUF4005) | 377 | 460 | IPR025064 | - | |
| Cpe17g00525 | 467 | PANTHER | - | 9 | 101 | - | - | |
| Cpe17g00525 | 467 | PANTHER | IQ-DOMAIN 5-RELATED | 142 | 194 | - | - | |
| Cpe17g00525 | 467 | MobiDBLite | consensus disorder prediction | 159 | 198 | - | - | |
| Cpe17g00525 | 467 | PANTHER | IQ-DOMAIN 5-RELATED | 201 | 455 | - | - | |
| Cpe17g00525 | 467 | PANTHER | - | 201 | 455 | - | - | |
| Cpe17g00525 | 467 | MobiDBLite | consensus disorder prediction | 422 | 442 | - | - | |
| Cpe17g00525 | 467 | PANTHER | - | 142 | 194 | - | - | |
| Cpe17g00525 | 467 | PANTHER | IQ-DOMAIN 5-RELATED | 9 | 101 | - | - | |
| Cpe17g00525 | 467 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g01092 | Cpe17g00525 | CCT | |
| Cpe02g01697 | Cpe17g00525 | CCT | |
| Cpe03g01092 | Cpe17g00525 | ECH | |
| Cpe02g01697 | Cpe17g00525 | ECH | |
| Cpe12g00644 | Cpe17g00525 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe08g00280 | Cpe-Chr8:1807896 | 9.94E-26 | dispersed | |
| Cpe12g00644 | Cpe-Chr12:6309281 | Cpe17g00525 | Cpe-Chr17:4376627 | 6.34E-30 | wgd | |
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe18g00396 | Cpe-Chr18:5187816 | 1.64E-07 | wgd | |
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe02g01697 | Cpe-Chr2:13961624 | 2.66E-57 | wgd | |
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe03g01092 | Cpe-Chr3:9011328 | 6.82E-08 | wgd | |
| Cpe17g00525 | Cpe-Chr17:4376627 | Cpe04g01092 | Cpe-Chr4:9504874 | 8.99E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe17g00525 | - | - | cmo:103500774 | 414.075 |