Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00525 ATTGTTTATATCATAATCTTACGCATCAACTCATTAGATGAGAGCCCAAAAATCATCAAAATCGACACCTATCGAACTCGATCAAAGTCTCGTAGGTACATCTCTACATTATCTGATTATGGAGGAGACGAAACAGCACCTCTCCAACCAATCTCTTCGTTGTTGCCATGTCTAAATCGACCTCACCCGTTTACACTTGATTGTCACAATGTGCATCAAGACTTCGAATGGTACTTGATGGACGAAGACTACAAGTTCCCTACAGCTCACAGTATGTCCCAACTATCAAATTCATTCGTCTCCACCAACATAGAGAAAAACAGAGTACCCATTGGAGGATTTCGCCATTTTCTTGAATTCCAGAAGGTGGGGGTTGGTGGATCGTCATTTTTCTTGTGGGTTTTCTTCTTTCTCTCTCTAAACATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTGGTTTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTGGTTAAGTTGCAGGCTGTCGTTCGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCTCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGTTTTGATGAAATAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTACGAAACCTCCATCAACTCATTGGACGAGAGCCCAAAAATCGTCGAAATCGACACGTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCACTTCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACGTTTACGCTTGATTGTCACAATGTGCATCGAGACTTCGAATGGTGTTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCAACGAACATGTCAGTCACCCCATCAAAGAGCGTCTGCGGGGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACA 1401 45.32 IVYIIILRINSLDESPKIIKIDTYRTRSKSRRYISTLSDYGGDETAPLQPISSLLPCLNRPHPFTLDCHNVHQDFEWYLMDEDYKFPTAHSMSQLSNSFVSTNIEKNRVPIGGFRHFLEFQKVGVGGSSFFLWVFFFLSLNMGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERFDEIRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSNAETKQPNSART 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4376627 4379990 - Cp4.1LG17g05290.1 Cpe17g00525 483843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00525 467 ProSiteProfiles IQ motif profile. 209 236 IPR000048 GO:0005515
Cpe17g00525 467 Pfam Protein of unknown function (DUF4005) 377 460 IPR025064 -
Cpe17g00525 467 PANTHER - 9 101 - -
Cpe17g00525 467 PANTHER IQ-DOMAIN 5-RELATED 142 194 - -
Cpe17g00525 467 MobiDBLite consensus disorder prediction 159 198 - -
Cpe17g00525 467 PANTHER IQ-DOMAIN 5-RELATED 201 455 - -
Cpe17g00525 467 PANTHER - 201 455 - -
Cpe17g00525 467 MobiDBLite consensus disorder prediction 422 442 - -
Cpe17g00525 467 PANTHER - 142 194 - -
Cpe17g00525 467 PANTHER IQ-DOMAIN 5-RELATED 9 101 - -
Cpe17g00525 467 MobiDBLite consensus disorder prediction 171 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00525 - - - cmo:103500774 414.075
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01092 Cpe17g00525 CCT
Cpe02g01697 Cpe17g00525 CCT
Cpe03g01092 Cpe17g00525 ECH
Cpe02g01697 Cpe17g00525 ECH
Cpe12g00644 Cpe17g00525 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00525 Cpe-Chr17:4376627 Cpe08g00280 Cpe-Chr8:1807896 9.94E-26 dispersed
Cpe12g00644 Cpe-Chr12:6309281 Cpe17g00525 Cpe-Chr17:4376627 6.34E-30 wgd
Cpe17g00525 Cpe-Chr17:4376627 Cpe18g00396 Cpe-Chr18:5187816 1.64E-07 wgd
Cpe17g00525 Cpe-Chr17:4376627 Cpe02g01697 Cpe-Chr2:13961624 2.66E-57 wgd
Cpe17g00525 Cpe-Chr17:4376627 Cpe03g01092 Cpe-Chr3:9011328 6.82E-08 wgd
Cpe17g00525 Cpe-Chr17:4376627 Cpe04g01092 Cpe-Chr4:9504874 8.99E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00525 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0