Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00535 ATGGTTATTGAGTTCTGTTTGTTGGTTCTGAATCCCCACAAGATGTTTTGGAGATTGGGTGTTGTTCTCGTCGACCAGCACCATGAGGATCGGCGATACGGCGATTTCCGAGGCTTGAGTGGGAGATCAAATTTAATAATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTTTCTAATATCGAGCCTAAGCAAATCAAAGTTTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAATCGTCTCGGCTTCAAGCTGTGAATAGGAAGCTTACGGCCATGAATAAGCTTCTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCACAGCTGGTGTATGAAAATGGCTATTTCCGCCGGCATACTCAGAGTACGACGCTTGGAGCTAAAGACACAAATTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGTGGCTTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCTTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACGTTGGCGCCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACCCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCACATTGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGTCAAAGGCTAACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAACTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCGAATGGATTTTCTTCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCCATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGATTCCTGCGGGAGCACAGATCAGAATGGGCAGATAACAACATTGATGCATATTCTGCTGCTGCTGTTAAAGTCGGCCCGTGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGCGAATCAAGTAATACTTCCACTAGCTCACACGATTGAGCACGAAGAAGGATTTGCCTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCATACGAAAGAGCTGTGGCTTGGAAGGTACTAAATGAAGAAGAAAATGCACACTGCATCTGTTTTATGTTTGTGAACTGGTCTTTTGTCTGA 1860 46.77 MVIEFCLLVLNPHKMFWRLGVVLVDQHHEDRRYGDFRGLSGRSNLIMAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRRHTQSTTLGAKDTNCEPVVTSGQHNLTSQHPPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSSISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFANQVILPLAHTIEHEEGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4476077 4482821 - Cp4.1LG17g05400.1 Cpe17g00535 483853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00535 619 CDD START_ArGLABRA2_like 202 418 - -
Cpe17g00535 619 SUPERFAMILY Bet v1-like 207 418 - -
Cpe17g00535 619 Gene3D - 56 129 - -
Cpe17g00535 619 Coils Coil 128 159 - -
Cpe17g00535 619 CDD homeodomain 63 123 IPR001356 GO:0003677
Cpe17g00535 619 SMART START_1 207 417 IPR002913 GO:0008289
Cpe17g00535 619 CDD bZIP 115 154 - -
Cpe17g00535 619 SMART HOX_1 60 126 IPR001356 GO:0003677
Cpe17g00535 619 Pfam Homeodomain 63 121 IPR001356 GO:0003677
Cpe17g00535 619 PANTHER CLASS III HD-ZIP PROTEIN CNA1 571 619 - -
Cpe17g00535 619 PANTHER CLASS III HD-ZIP PROTEIN CNA1 47 571 - -
Cpe17g00535 619 Pfam START domain 208 416 IPR002913 GO:0008289
Cpe17g00535 619 ProSiteProfiles 'Homeobox' domain profile. 58 122 IPR001356 GO:0003677
Cpe17g00535 619 Pfam MEKHLA domain 570 618 IPR013978 -
Cpe17g00535 619 ProSiteProfiles START domain profile. 198 426 IPR002913 GO:0008289
Cpe17g00535 619 Gene3D - 242 426 IPR023393 -
Cpe17g00535 619 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 571 619 IPR044830 GO:0003700
Cpe17g00535 619 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 47 571 IPR044830 GO:0003700
Cpe17g00535 619 SUPERFAMILY Homeodomain-like 62 124 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00492 Cpe-Chr6:2918408 Cpe17g00535 Cpe-Chr17:4476077 0 dispersed
Cpe12g00658 Cpe-Chr12:6406594 Cpe17g00535 Cpe-Chr17:4476077 0 dispersed
Cpe17g00535 Cpe-Chr17:4476077 Cpe19g01171 Cpe-Chr19:7886271 1.40E-16 dispersed
Cpe17g00535 Cpe-Chr17:4476077 Cpe06g00487 Cpe-Chr6:2880183 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50807 PF01852 START 1.60E-54 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00535 K09338 - csv:101213106 1048.88