Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00544 ATGGCTTGGTTCACCATTGGAAGCTTCCAAGATTCCTTTAGCTTGCGCTCTTGCAAGGCGTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTCGGTTCCGCCATTGCCTACGATAAAATAACATCCTCTGCAGCTTTAGACCCAGCGGGGCTGGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCCAACATCTCCGGTGGCCATGTCAACCCAGCGGTGACATTCGGCCTTCTTCTTGGTGACCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTGGCAGTTCCGGTCCACAGCGTGGCGGCCGGCATCGGAGCAGCGGAAGGAGTTGTGATGGAAATTGTCATCACATTCGGTCTGGTTTACACGGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCAATTGCCATCGGATTCATCGTCGGAGCAAACATTTTGGCAGCCGGACCGTTTTCCGGCGGATCGATGAACCCGGCCCGGTCATTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCACTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAGCGATTACTAA 747 54.22 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYDKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGIGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4517086 4522524 + Cp4.1LG17g05510.1 Cpe17g00544 483862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00544 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cpe17g00544 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Cpe17g00544 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cpe17g00544 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 PANTHER MIP PROTEIN 1 248 - -
Cpe17g00544 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe17g00544 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00205 Cpe-Chr3:1022954 Cpe17g00544 Cpe-Chr17:4517086 5.15E-95 dispersed
Cpe05g00252 Cpe-Chr5:1436359 Cpe17g00544 Cpe-Chr17:4517086 4.58E-120 dispersed
Cpe07g00219 Cpe-Chr7:1415743 Cpe17g00544 Cpe-Chr17:4517086 4.16E-83 dispersed
Cpe13g00078 Cpe-Chr13:604864 Cpe17g00544 Cpe-Chr17:4517086 4.85E-40 dispersed
Cpe17g00544 Cpe-Chr17:4517086 Cpe19g00437 Cpe-Chr19:3899285 4.25E-84 dispersed
Cpe17g00544 Cpe-Chr17:4517086 Cpe10g00246 Cpe-Chr10:1431950 2.42E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00544 K09873 - csv:101218611 460.685