Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00563 | ATGGATTTCTGGCCGGAGTTTCTTGCAACCAGTTGGGGTAAAGAATTTGTCGCCGGTGGATTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTATTGCAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCTGCTGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTTTTGGAGGATTTGTCACTGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTAGTGAAAATCCGCCTGCAATTGCAAAGTTCTTCTAACCAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTTGCCGGAGGGCTCGCCGGAGTAGGCAGCTGGGTTGTCTGTTATCCCTTAGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAGTATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGTCCGTCTTTGCTGCATATGAGATTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA | 882 | 49.21 | MDFWPEFLATSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIIANHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVAFGGFVTGALQSFILSPVELVKIRLQLQSSSNQGPVSVAKRICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGSVFAAYEITLRCLFSNQAL | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 4619591 | 4624848 | - | Cp4.1LG17g05730.1 | Cpe17g00563 | 483881 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00563 | 293 | PANTHER | CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN | 1 | 289 | - | - | |
Cpe17g00563 | 293 | Gene3D | Mitochondrial carrier domain | 14 | 292 | IPR023395 | - | |
Cpe17g00563 | 293 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 13 | 92 | IPR018108 | - | |
Cpe17g00563 | 293 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085 | |
Cpe17g00563 | 293 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085 | |
Cpe17g00563 | 293 | PRINTS | Mitochondrial carrier protein signature | 160 | 178 | IPR002067 | GO:0055085 | |
Cpe17g00563 | 293 | PRINTS | Mitochondrial carrier protein signature | 207 | 229 | IPR002067 | GO:0055085 | |
Cpe17g00563 | 293 | Pfam | Mitochondrial carrier protein | 109 | 188 | IPR018108 | - | |
Cpe17g00563 | 293 | Pfam | Mitochondrial carrier protein | 199 | 290 | IPR018108 | - | |
Cpe17g00563 | 293 | Pfam | Mitochondrial carrier protein | 11 | 94 | IPR018108 | - | |
Cpe17g00563 | 293 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 187 | IPR018108 | - | |
Cpe17g00563 | 293 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 1 | 289 | - | - | |
Cpe17g00563 | 293 | SUPERFAMILY | Mitochondrial carrier | 11 | 281 | IPR023395 | - | |
Cpe17g00563 | 293 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 198 | 286 | IPR018108 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01678 | Cpe17g00563 | CCT | |
Cpe03g01111 | Cpe17g00563 | CCT | |
Cpe12g00690 | Cpe17g00563 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe17g00563 | Cpe-Chr17:4619591 | Cpe20g00444 | Cpe-Chr20:2543331 | 5.87E-35 | dispersed | |
Cpe12g00690 | Cpe-Chr12:6562691 | Cpe17g00563 | Cpe-Chr17:4619591 | 4.76E-163 | wgd | |
Cpe17g00563 | Cpe-Chr17:4619591 | Cpe02g01678 | Cpe-Chr2:13881484 | 2.59E-147 | wgd | |
Cpe17g00563 | Cpe-Chr17:4619591 | Cpe03g01111 | Cpe-Chr3:9141112 | 5.68E-149 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00563 | K15109 | - | csv:101222165 | 489.189 |