Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00563 ATGGATTTCTGGCCGGAGTTTCTTGCAACCAGTTGGGGTAAAGAATTTGTCGCCGGTGGATTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTATTGCAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCTGCTGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTTTTGGAGGATTTGTCACTGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTAGTGAAAATCCGCCTGCAATTGCAAAGTTCTTCTAACCAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTTGCCGGAGGGCTCGCCGGAGTAGGCAGCTGGGTTGTCTGTTATCCCTTAGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAGTATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGTCCGTCTTTGCTGCATATGAGATTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA 882 49.21 MDFWPEFLATSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIIANHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVAFGGFVTGALQSFILSPVELVKIRLQLQSSSNQGPVSVAKRICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGSVFAAYEITLRCLFSNQAL 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4619591 4624848 - Cp4.1LG17g05730.1 Cpe17g00563 483881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00563 293 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 289 - -
Cpe17g00563 293 Gene3D Mitochondrial carrier domain 14 292 IPR023395 -
Cpe17g00563 293 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Cpe17g00563 293 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cpe17g00563 293 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cpe17g00563 293 PRINTS Mitochondrial carrier protein signature 160 178 IPR002067 GO:0055085
Cpe17g00563 293 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Cpe17g00563 293 Pfam Mitochondrial carrier protein 109 188 IPR018108 -
Cpe17g00563 293 Pfam Mitochondrial carrier protein 199 290 IPR018108 -
Cpe17g00563 293 Pfam Mitochondrial carrier protein 11 94 IPR018108 -
Cpe17g00563 293 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 187 IPR018108 -
Cpe17g00563 293 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 289 - -
Cpe17g00563 293 SUPERFAMILY Mitochondrial carrier 11 281 IPR023395 -
Cpe17g00563 293 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 286 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01678 Cpe17g00563 CCT
Cpe03g01111 Cpe17g00563 CCT
Cpe12g00690 Cpe17g00563 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00563 Cpe-Chr17:4619591 Cpe20g00444 Cpe-Chr20:2543331 5.87E-35 dispersed
Cpe12g00690 Cpe-Chr12:6562691 Cpe17g00563 Cpe-Chr17:4619591 4.76E-163 wgd
Cpe17g00563 Cpe-Chr17:4619591 Cpe02g01678 Cpe-Chr2:13881484 2.59E-147 wgd
Cpe17g00563 Cpe-Chr17:4619591 Cpe03g01111 Cpe-Chr3:9141112 5.68E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00563 K15109 - csv:101222165 489.189