Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00578 ATGACATATTTTCCTAGTTTAAGCAATCCAAGAGAGTCCACGTTGGGTGACCAAAAACTTGGTTCTTCCTGTCAAGAACAGCTGCTCTGTTCTGCGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGCGGTGATTACTCTGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGGGTTTCATTCCACCGGTTGTGGGAATTTTAGATCACTCAAATTTTCAATGTCAGGGTGTTTCTCTTAGCCTTTCCACACACTTACCTTCTGTTGTTTCATTGCCTTCATTTCCTTCCCAATATCAGACCCGTGCCTTGCCTTCTTCATTTATCTGTGCACCTCCTTCGATCTTTGAGCAAAGGTCGAATCCGAAACTGTGTATGTCTGATGCGAAAAATGGTATGTATATGTCGGTTGCTGCTGCGAATTTGGTTTCGAATTCGATATACGTTGAAGCTGCACAGCAGTTGCTTGATGAAGTTGTTAGCATTGGGGAAGCTTTGAAGGAGTTGAAGTCTAAGAAACTCAAAGGTTCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGACGGATTTGTTGCTTGCGAACTCGTCCGGTGATCTATCGCCTACTGAACGACAGGACTTGAAGAACAAAAACTCGAAGCTGTTGTCCTTGTTGGGTGAGGTCGATCGAAGATACAAGCAATACTACCAACAAGAGCAGTTCTTAGCGTCGTCGTTCGACCTGGTAGCGGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACATTGGACTATTTCGTGTCACTTTCGACGTCTGCGAGATGCCATCAATGCACAGATTAAGACCACAAGAAGAACCTTAGGGGAGCAAGATGCTTCACATTCTGGCCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGATCAGCAGCTCAGGCAACAGAGAACCCTTCAGCAGCTCGGCGTCACGTCACATAGTTGGAGGCCTCAAAGAGGACTCCCCGAAAGCTCCGTGTCGATTCTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAAGATACAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTCGAAACCAAGTTGCAAACTGGTTCATAAACGCGCGTGTTCGGCTATGGAAACCGATGGTCGAAGAGATGTACAAAGAAGAATTCGGAGACACTAACATGGACATCAAATCCTCACCAGAAAACGCATCCAAACCATCATGGAACAACAACTCACTCTTCTCCGAGGACAGGTCAGGAGACAAGTTACACGACAACACGAAGTCAGCAGCCAGCAACAACGAGCGAGTTCTCTACTGTCCGTGTTCTACCGACGACATGATCAAGCCGAGTAACTTCTTGGTCGACGGAGACGTTTCACTAGCACTGGAGCTGAAGCATTGCGAAGGCGAAGAATTTGGCATGTTCGGAAGTAGTAACAATAGAATGGTCGGTTCTATAGAGCTTGAGACACAAGATTTCCAATGCAGGCTCCCAAGCTCAAATATGTTGCATGATTTTGTAGTTTGA 1575 45.9 MTYFPSLSNPRESTLGDQKLGSSCQEQLLCSANLMMFMNHQDPSCGDYSEIFSGVSSNYVESVGDRSNGEMGFIPPVVGILDHSNFQCQGVSLSLSTHLPSVVSLPSFPSQYQTRALPSSFICAPPSIFEQRSNPKLCMSDAKNGMYMSVAAANLVSNSIYVEAAQQLLDEVVSIGEALKELKSKKLKGSNDLTGEMCSDATDLLLANSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQEQFLASSFDLVAGRGAAEFYTALAHWTISCHFRRLRDAINAQIKTTRRTLGEQDASHSGQEGIPRLRFVDQQLRQQRTLQQLGVTSHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDTEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDTNMDIKSSPENASKPSWNNNSLFSEDRSGDKLHDNTKSAASNNERVLYCPCSTDDMIKPSNFLVDGDVSLALELKHCEGEEFGMFGSSNNRMVGSIELETQDFQCRLPSSNMLHDFVV 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4719166 4722520 - Cp4.1LG17g05750.1 Cpe17g00578 483896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00578 524 MobiDBLite consensus disorder prediction 410 431 - -
Cpe17g00578 524 Pfam Associated with HOX 156 284 IPR006563 -
Cpe17g00578 524 CDD homeodomain 334 395 IPR001356 GO:0003677
Cpe17g00578 524 MobiDBLite consensus disorder prediction 410 444 - -
Cpe17g00578 524 SMART HOX_1 334 398 IPR001356 GO:0003677
Cpe17g00578 524 SUPERFAMILY Homeodomain-like 335 402 IPR009057 -
Cpe17g00578 524 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Cpe17g00578 524 Gene3D - 329 408 - -
Cpe17g00578 524 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Cpe17g00578 524 SMART prehox3 150 286 IPR006563 -
Cpe17g00578 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 450 - -
Cpe17g00578 524 Coils Coil 165 185 - -
Cpe17g00578 524 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 26 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00265 Cpe-Chr16:4649470 Cpe17g00578 Cpe-Chr17:4719166 5.04E-102 dispersed
Cpe17g00578 Cpe-Chr17:4719166 Cpe05g01122 Cpe-Chr5:7581995 4.98E-69 dispersed
Cpe12g00736 Cpe-Chr12:6825921 Cpe17g00578 Cpe-Chr17:4719166 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50811 PF07526 POX 4.60E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00578 - - cmax:111494608 982.245