Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00628 ATGAATAATCTTCATGCTATTTTCCCAATGATCGATGCGAGGCCAGAGCTTGCTGGGTTTTCAATTTCTCACATGGTAGCCAAAATGGAAGCTCAATCCCCAGGAGTTCCTGAGGTTATTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATTCTTGTAGCATTGGTTGTTTCTTCCACTCTTCTTGGAGCTATATTGTTGTTCCTTTTGTGTGTTTGGATATATCGTCGAAGAACGTCGAAACTCGATGATGGAGAATGTCGAAAGGATTTGGAGGTTTCGAAATCGACGACGATGAACCCCATATCCAGATTTAACTCCTTGAGGTTGGCTAATTTTAAAGGTTCGGTTTCGATGATCGATTATAAACTGTTGGAAGCCGCTACTGATAACTTCAGCAAAAGCAATGTTTTGGACGAGGGTAGTACCGGACATGTTTATAAAGCTCGATTCGATGATAAAATGCTTGCAGCTGTGAAGAGAATCGACTGTGGAGGACCGGATGCTGAACGAGAATTCGAGAATGAGGTGAACTGGTTGTGTAAAATACGACATCAAAACGTAATCAAGCTCTTGGGGCACTGCATTCGTGACGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACGTGGCATCTCCGAATGAAGATCGCGGTCGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCGGTCGTTCACCGTGACTTAAAATCATCGAATATCCTTCTAGATTCGGACTTTAACGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAGAACATAAAGCTCTCGGGAACGCTCGGATATGTCGCCCCCGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGCGACGTCTATGCTTTCGGGGTCGTTCTTTTAGAGCTTCTGACCGGGAAAAAGCCCGTCGAGAAAATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAACTTAGCGACCGATCAAAGCTACCGAAAGTTGTCGATCCCGTGATAAGGGACACAATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTGTTATGTGTACAATCGGAACCGAGCTATCGACCGTTGGTTACCGACGTTCTGCATTCCCTGATCCCTCTTGTACCTGTAGAGCTTGGAGGATCACTAAGAATTACCGAACCGCTGCATCTGAAAGAGCCTTCGTCGACCCGCTAA 1290 45.04 MNNLHAIFPMIDARPELAGFSISHMVAKMEAQSPGVPEVIRVVHHQDLNKRILVALVVSSTLLGAILLFLLCVWIYRRRTSKLDDGECRKDLEVSKSTTMNPISRFNSLRLANFKGSVSMIDYKLLEAATDNFSKSNVLDEGSTGHVYKARFDDKMLAAVKRIDCGGPDAEREFENEVNWLCKIRHQNVIKLLGHCIRDETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKVVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHLKEPSSTR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5144289 5147021 + Cp4.1LG17g08790.1 Cpe17g00628 483946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00628 429 SUPERFAMILY Protein kinase-like (PK-like) 110 402 IPR011009 -
Cpe17g00628 429 Gene3D Phosphorylase Kinase; domain 1 94 208 - -
Cpe17g00628 429 SMART serkin_6 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00628 429 Gene3D Transferase(Phosphotransferase) domain 1 209 407 - -
Cpe17g00628 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cpe17g00628 429 Pfam Protein tyrosine and serine/threonine kinase 136 361 IPR001245 GO:0004672|GO:0006468
Cpe17g00628 429 PANTHER BNAC02G46490D PROTEIN 21 422 - -
Cpe17g00628 429 PANTHER OS01G0750732 PROTEIN 21 422 - -
Cpe17g00628 429 ProSiteProfiles Protein kinase domain profile. 133 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00309 Cpe-Chr11:1670357 Cpe17g00628 Cpe-Chr17:5144289 4.82E-132 dispersed
Cpe17g00628 Cpe-Chr17:5144289 Cpe17g00482 Cpe-Chr17:3577916 2.12E-32 dispersed
Cpe12g00766 Cpe-Chr12:6980072 Cpe17g00628 Cpe-Chr17:5144289 0 wgd
Cpe17g00628 Cpe-Chr17:5144289 Cpe18g00074 Cpe-Chr18:1873132 5.73E-17 wgd
Cpe17g00628 Cpe-Chr17:5144289 Cpe07g00310 Cpe-Chr7:2015264 1.68E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62952 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00628 - - bhj:120085274 752.281