Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00635 ATGGGGATATATCTGAGCTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGAGAACGAAAGACTTCGGTACGGCCTTTCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTACCTTCACGGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATGTGGGAACTTCATTACAGAAGTCCTTTCTCAGAATGGATGAGATGATGCTTGGACAGAGGGGATGGAGAGAGTTAGCTGTTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTAGCGAAGCTAACAACCAAGTGGACAATTGGCCTGCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATTCGAAATAACCAACTTGTGGTAGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCTATAGGAGACATGGAATTTAAGCAGAACAAAAGTATGCCTGCAGAAAAGCAGATTGTAACAGCCAACCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTAATTGCCTGTGATGGGATCTGGGATTGCATGTCTAGCCAACAACTGGTCGACTACATCGGAGATCAACTAAAAACAGAAAGCAAACTCTCAGTTATTTGCGAGAGAGTATTTGACAGATGTTTGGCACCTTCAGCTGGTGGTGAAGGATGTGACAACATGACCATGATCTTGGTTCAGTTTAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACTTAGATCTGATGATCCAAACGAAGGCTCTTCTAAAACCGAATAG 1089 45.27 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHGQVLKHESYMAGDVGTSLQKSFLRMDEMMLGQRGWRELAVLGDKMDKISGMIEGFIWSPKSSEANNQVDNWPAEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASAEELPSSSNQLRSDDPNEGSSKTE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5186043 5191298 - Cp4.1LG17g08530.1 Cpe17g00635 483953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00635 362 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Cpe17g00635 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Cpe17g00635 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cpe17g00635 362 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Cpe17g00635 362 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Cpe17g00635 362 CDD PP2Cc 23 328 IPR001932 -
Cpe17g00635 362 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Cpe17g00635 362 MobiDBLite consensus disorder prediction 338 354 - -
Cpe17g00635 362 SMART PP2C_4 13 326 IPR001932 -
Cpe17g00635 362 Gene3D - 1 329 IPR036457 -
Cpe17g00635 362 MobiDBLite consensus disorder prediction 336 362 - -
Cpe17g00635 362 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00317 Cpe-Chr2:1677448 Cpe17g00635 Cpe-Chr17:5186043 0 dispersed
Cpe17g00635 Cpe-Chr17:5186043 Cpe09g00038 Cpe-Chr9:231284 1.31E-38 dispersed
Cpe12g00778 Cpe-Chr12:7048385 Cpe17g00635 Cpe-Chr17:5186043 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00635 K17499 - csv:101214132 681.404