Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00641 ATGAGTGGTGACAAGAAGACGATCATTCAACGCCAAACTTCCTATAATCCTCTCTATGTTAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAGGTAAGGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTTCTCTGCGACAAAGAAAACGCGATTCCGATTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGGTTTTTGGGTCTAAGTTGTGGGAGGGGACTGATTCAGAGCATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCTTGGTCCACATTGCCTAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGGCTTCGTGGTGGTGCTTTCTATTCTCTCTACACCAATGAAGGGAAGGGAAGGCAGGACCGGAAGTTGGCGGTGGCTCGGCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCACCAAACAATTCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAGCTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGGAGAGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA 1215 46.01 MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLCDKENAIPINGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFGSKLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5218633 5222053 + Cp4.1LG17g08610.1 Cpe17g00641 483959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00641 404 MobiDBLite consensus disorder prediction 33 56 - -
Cpe17g00641 404 PANTHER TUBBY-RELATED 1 402 - -
Cpe17g00641 404 Pfam Tub family 150 398 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 360 379 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 381 403 IPR000007 -
Cpe17g00641 404 PANTHER TUBBY-LIKE PROTEIN 8 1 402 - -
Cpe17g00641 404 SUPERFAMILY Tubby C-terminal domain-like 137 402 IPR025659 -
Cpe17g00641 404 Gene3D Tubby Protein; Chain A 142 403 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00641 Cpe-Chr17:5218633 Cpe02g00859 Cpe-Chr2:5722716 4.18E-14 dispersed
Cpe17g00641 Cpe-Chr17:5218633 Cpe03g01389 Cpe-Chr3:11176850 2.85E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50813 PF01167 Tub 2.90E-45 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00641 K19600 - csv:101216780 752.666