Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00641 ATGAGTGGTGACAAGAAGACGATCATTCAACGCCAAACTTCCTATAATCCTCTCTATGTTAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAGGTAAGGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTTCTCTGCGACAAAGAAAACGCGATTCCGATTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGGTTTTTGGGTCTAAGTTGTGGGAGGGGACTGATTCAGAGCATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCTTGGTCCACATTGCCTAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGGCTTCGTGGTGGTGCTTTCTATTCTCTCTACACCAATGAAGGGAAGGGAAGGCAGGACCGGAAGTTGGCGGTGGCTCGGCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCACCAAACAATTCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAGCTTGTTTCTAGAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGGAGAGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA 1215 46.01 MSGDKKTIIQRQTSYNPLYVNPLTDLRHNRSCSDGGFRQGKENLTPNTKEKQSDENGVLCDKENAIPINGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFGSKLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5218633 5222053 + Cp4.1LG17g08610.1 Cpe17g00641 483959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00641 404 MobiDBLite consensus disorder prediction 33 56 - -
Cpe17g00641 404 PANTHER TUBBY-RELATED 1 402 - -
Cpe17g00641 404 Pfam Tub family 150 398 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 225 249 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 360 379 IPR000007 -
Cpe17g00641 404 PRINTS Tubby superfamily signature 381 403 IPR000007 -
Cpe17g00641 404 PANTHER TUBBY-LIKE PROTEIN 8 1 402 - -
Cpe17g00641 404 SUPERFAMILY Tubby C-terminal domain-like 137 402 IPR025659 -
Cpe17g00641 404 Gene3D Tubby Protein; Chain A 142 403 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00641 K19600 TUB, TULP; tubby and related proteins - csv:101216780 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00641 Cpe-Chr17:5218633 Cpe02g00859 Cpe-Chr2:5722716 4.18E-14 dispersed
Cpe17g00641 Cpe-Chr17:5218633 Cpe03g01389 Cpe-Chr3:11176850 2.85E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT1G76900 70.4 7.2e-174 607.4
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT1G76900 69.4 5.9e-168 587.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT1G76900 66.4 8.8e-164 573.9
Cpe01g00454 . 1 394 TUB Transcription Factor Family AT1G76900 68.4 9.4e-150 527.3
Cpe13g00683 CCT 1 370 TUB Transcription Factor Family AT1G76900 60.8 4.0e-140 495.4
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT1G76900 51.5 1.0e-116 417.5
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT1G76900 50.2 9.2e-113 404.4
Cpe08g00216 . 13 231 TUB Transcription Factor Family AT1G76900 53.6 3.9e-63 239.6
Cpe14g00302 . 174 428 TUB Transcription Factor Family AT1G25280 73.4 1.6e-101 366.3
Cpe02g00859 . 185 438 TUB Transcription Factor Family AT1G25280 68.9 1.5e-94 343.2
Cpe01g02118 CCT 175 444 TUB Transcription Factor Family AT1G25280 66.3 1.8e-87 319.7
Cpe01g00454 . 174 394 TUB Transcription Factor Family AT1G25280 68.4 2.5e-78 289.3
Cpe14g00525 . 178 414 TUB Transcription Factor Family AT1G25280 55.3 4.3e-70 261.9
Cpe03g01389 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.2 2.8e-69 259.2
Cpe01g00695 . 177 413 TUB Transcription Factor Family AT1G25280 56.2 3.7e-69 258.8
Cpe17g00002 CCT,CST,ECH 154 386 TUB Transcription Factor Family AT1G25280 53.2 5.3e-68 255.0
Cpe02g00120 CCT,ECH 192 420 TUB Transcription Factor Family AT1G25280 54.5 4.5e-67 251.9
Cpe06g00104 CCT,ECH 180 407 TUB Transcription Factor Family AT1G25280 53.0 3.8e-66 248.8
Cpe13g00683 CCT 175 370 TUB Transcription Factor Family AT1G25280 55.7 3.7e-61 232.3
Cpe19g00814 . 183 421 TUB Transcription Factor Family AT1G25280 50.9 6.3e-61 231.5
Cpe17g00002 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT5G18680 62.5 9.0e-101 364.0
Cpe03g01389 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.6 1.1e-95 347.1
Cpe12g00258 CCT,CST,ECH 94 392 TUB Transcription Factor Family AT5G18680 57.3 3.2e-90 328.9
Cpe14g00302 . 113 428 TUB Transcription Factor Family AT5G18680 53.1 8.5e-83 304.3
Cpe02g00859 . 112 438 TUB Transcription Factor Family AT5G18680 50.8 1.2e-81 300.4
Cpe01g02118 CCT 112 444 TUB Transcription Factor Family AT5G18680 50.6 2.3e-80 296.2
Cpe01g00695 . 115 413 TUB Transcription Factor Family AT5G18680 53.3 1.4e-77 287.0
Cpe14g00525 . 116 414 TUB Transcription Factor Family AT5G18680 51.5 4.1e-77 285.4
Cpe02g00120 CCT,ECH 128 420 TUB Transcription Factor Family AT5G18680 50.8 9.1e-77 284.3
Cpe08g00216 . 98 231 TUB Transcription Factor Family AT5G18680 63.2 1.1e-42 171.0
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT2G18280 60.9 9.0e-141 497.3
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT2G18280 60.8 1.5e-140 496.5
Cpe19g00814 . 1 421 TUB Transcription Factor Family AT2G18280 58.9 6.9e-133 471.1
Cpe06g00104 CCT,ECH 1 407 TUB Transcription Factor Family AT2G18280 59.3 3.4e-124 442.2
Cpe02g00120 CCT,ECH 14 420 TUB Transcription Factor Family AT2G18280 58.8 1.9e-122 436.4
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT2G18280 52.5 6.3e-118 421.4
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT2G18280 50.7 3.8e-115 412.1
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.6 5.0e-115 411.8
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 52.8 6.1e-113 404.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT2G18280 51.5 1.8e-112 403.3
Cpe12g00258 CCT,CST,ECH 12 392 TUB Transcription Factor Family AT2G18280 50.9 2.8e-102 369.4
Cpe01g00519 CST 51 383 TUB Transcription Factor Family AT2G18280 51.1 1.1e-93 340.9
Cpe14g00370 CST 53 395 TUB Transcription Factor Family AT2G18280 50.6 7.0e-93 338.2
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT2G47900 68.5 2.6e-159 558.9
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 67.0 3.5e-156 548.5
Cpe12g00258 CCT,CST,ECH 11 392 TUB Transcription Factor Family AT2G47900 63.5 1.2e-135 480.3
Cpe02g00859 . 1 438 TUB Transcription Factor Family AT2G47900 55.7 1.2e-132 470.3
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT2G47900 55.7 3.7e-129 458.8
Cpe01g02118 CCT 1 444 TUB Transcription Factor Family AT2G47900 53.7 5.5e-125 444.9
Cpe14g00525 . 1 414 TUB Transcription Factor Family AT2G47900 56.2 1.0e-123 440.7
Cpe01g00695 . 1 413 TUB Transcription Factor Family AT2G47900 55.8 1.1e-120 430.6
Cpe02g00120 CCT,ECH 20 420 TUB Transcription Factor Family AT2G47900 57.0 7.7e-119 424.5
Cpe06g00104 CCT,ECH 50 407 TUB Transcription Factor Family AT2G47900 60.1 9.4e-117 417.5
Cpe01g00454 . 1 394 TUB Transcription Factor Family AT2G47900 53.2 2.6e-111 399.4
Cpe19g00814 . 1 421 TUB Transcription Factor Family AT2G47900 51.2 7.7e-111 397.9
Cpe01g00519 CST 51 383 TUB Transcription Factor Family AT2G47900 52.9 5.9e-103 371.7
Cpe14g00370 CST 53 395 TUB Transcription Factor Family AT2G47900 50.4 3.0e-99 359.4
Cpe08g00216 . 1 231 TUB Transcription Factor Family AT2G47900 63.5 4.3e-85 312.4
Cpe17g00641 . 70 295 TUB Transcription Factor Family AT1G16070 61.7 2.6e-76 282.7
Cpe14g00302 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 8.6e-146 513.8
Cpe02g00859 . 67 438 TUB Transcription Factor Family AT1G43640 67.4 2.3e-143 505.8
Cpe01g02118 CCT 65 444 TUB Transcription Factor Family AT1G43640 62.2 1.2e-134 476.9
Cpe01g00454 . 66 394 TUB Transcription Factor Family AT1G43640 65.7 2.9e-125 445.7
Cpe13g00683 CCT 65 370 TUB Transcription Factor Family AT1G43640 56.1 3.4e-110 395.6
Cpe17g00002 CCT,CST,ECH 47 386 TUB Transcription Factor Family AT1G43640 51.8 7.9e-107 384.4
Cpe03g01389 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.1e-105 380.6
Cpe12g00258 CCT,CST,ECH 49 392 TUB Transcription Factor Family AT1G43640 50.3 2.1e-99 359.8
Cpe06g00104 CCT,ECH 69 407 TUB Transcription Factor Family AT1G43640 51.0 1.0e-98 357.5
Cpe02g00120 CCT,ECH 81 420 TUB Transcription Factor Family AT1G43640 50.7 3.0e-98 355.9
Cpe14g00525 . 69 414 TUB Transcription Factor Family AT1G43640 51.1 8.7e-98 354.4
Cpe08g00216 . 49 231 TUB Transcription Factor Family AT1G43640 55.7 8.2e-56 214.9
Cpe02g00120 CCT,ECH 47 420 TUB Transcription Factor Family AT1G47270 63.7 1.8e-133 473.0
Cpe06g00104 CCT,ECH 34 407 TUB Transcription Factor Family AT1G47270 63.7 4.0e-133 471.9
Cpe14g00525 . 34 414 TUB Transcription Factor Family AT1G47270 57.5 1.2e-121 433.7
Cpe01g00695 . 34 413 TUB Transcription Factor Family AT1G47270 57.8 2.7e-121 432.6
Cpe19g00814 . 33 421 TUB Transcription Factor Family AT1G47270 57.3 3.0e-120 429.1
Cpe14g00302 . 1 428 TUB Transcription Factor Family AT1G47270 51.3 7.8e-113 404.4
Cpe02g00859 . 31 438 TUB Transcription Factor Family AT1G47270 51.3 2.5e-111 399.4
Cpe17g00002 CCT,CST,ECH 1 386 TUB Transcription Factor Family AT1G47270 50.7 2.1e-110 396.4
Cpe01g02118 CCT 48 444 TUB Transcription Factor Family AT1G47270 51.0 9.9e-108 387.5
Cpe03g01389 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 51.7 2.1e-105 379.8
Cpe14g00370 CST 1 395 TUB Transcription Factor Family AT1G53320 69.7 2.0e-153 539.3
Cpe01g00519 CST 1 383 TUB Transcription Factor Family AT1G53320 70.3 6.4e-152 534.3
Cpe01g00695 . 20 413 TUB Transcription Factor Family AT1G53320 50.5 2.1e-102 369.8
Cpe17g00002 CCT,CST,ECH 24 386 TUB Transcription Factor Family AT1G53320 50.1 1.8e-101 366.7
Cpe14g00525 . 20 414 TUB Transcription Factor Family AT1G53320 50.1 2.3e-101 366.3
Cpe03g01389 CCT,ECH 33 387 TUB Transcription Factor Family AT1G53320 50.8 7.0e-98 354.8
Cpe08g00216 . 33 231 TUB Transcription Factor Family AT1G53320 52.3 7.8e-57 218.4
Cpe03g01389 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.4 1.1e-95 347.1
Cpe17g00002 CCT,CST,ECH 98 386 TUB Transcription Factor Family AT3G06380 62.5 1.9e-95 346.3
Cpe12g00258 CCT,CST,ECH 98 392 TUB Transcription Factor Family AT3G06380 56.2 5.1e-85 311.6
Cpe14g00302 . 117 428 TUB Transcription Factor Family AT3G06380 54.1 2.4e-82 302.8
Cpe02g00859 . 116 438 TUB Transcription Factor Family AT3G06380 50.8 3.8e-80 295.4
Cpe02g00120 CCT,ECH 131 420 TUB Transcription Factor Family AT3G06380 50.8 5.5e-79 291.6
Cpe14g00525 . 120 414 TUB Transcription Factor Family AT3G06380 51.5 3.0e-77 285.8
Cpe01g00695 . 119 413 TUB Transcription Factor Family AT3G06380 53.2 3.9e-77 285.4
Cpe01g02118 CCT 116 444 TUB Transcription Factor Family AT3G06380 50.2 3.9e-77 285.4
Cpe06g00104 CCT,ECH 120 407 TUB Transcription Factor Family AT3G06380 50.7 1.5e-76 283.5
Cpe01g00454 . 117 394 TUB Transcription Factor Family AT3G06380 50.4 2.9e-64 242.7
Cpe08g00216 . 98 231 TUB Transcription Factor Family AT3G06380 65.7 5.2e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011488 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50813 PF01167 Tub 2.90E-45 CL0395 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00641 Cpe_Chr17 FPKM 52.235256 65.19368 40.11393 38.737518 45.498402 40.817215 42.249466 32.550598 32.78651 34.503727