Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00642 | ATGGAAGGCCAATCAAGAGAAGAGTATATTAGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGGAGATGGGAAGCTCGAATCGGCAGAGTGTTCGGCAACAAATATCTTTACCTTGGAACATACGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATAACCGTCCATCAAGTCCAAACGCCGGTGACACTGCCTCAGAATTTGACCCCAAATCCCCTCTCGAAATTACCTTTCCGTCGCAATCTTCGAGCTCCGACCAACCAACTACCGCGCCGGAACCTCACGGCGGCCACCCCTCATCGTCGTCGGCGACGTTGGAGCTGCTACTCCATTCGTCAAAATTTAAACACATACTAGAAAGGACATCCGCCGCTGAGACTCCACAGACGCTGCCGGAATCCGTCCGGCCGCGTCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCTGACGACATTGCCGGAAGCGACGACGGAATTTTCGGGTACCTAAACTCGTATTTTCCTTCATCAGTTTTTCATAGCGCACTCGATGCTTAA | 705 | 49.65 | MEGQSREEYIRYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNNRPSSPNAGDTASEFDPKSPLEITFPSQSSSSDQPTTAPEPHGGHPSSSSATLELLLHSSKFKHILERTSAAETPQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGYLNSYFPSSVFHSALDA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5221863 | 5227204 | - | Cp4.1LG17g08570.1 | Cpe17g00642 | 483960 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00642 | 234 | MobiDBLite | consensus disorder prediction | 95 | 152 | - | - | |
Cpe17g00642 | 234 | MobiDBLite | consensus disorder prediction | 124 | 152 | - | - | |
Cpe17g00642 | 234 | SMART | rav1_2 | 26 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe17g00642 | 234 | CDD | AP2 | 25 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe17g00642 | 234 | Gene3D | AP2/ERF domain | 25 | 86 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe17g00642 | 234 | ProSiteProfiles | AP2/ERF domain profile. | 26 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe17g00642 | 234 | Pfam | AP2 domain | 25 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe17g00642 | 234 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Cpe17g00642 | 234 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 1 | 212 | - | - | |
Cpe17g00642 | 234 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 212 | - | - | |
Cpe17g00642 | 234 | SUPERFAMILY | DNA-binding domain | 25 | 86 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe17g00642 | Cpe-Chr17:5221863 | Cpe18g00584 | Cpe-Chr18:6264092 | 6.07E-78 | dispersed | |
Cpe12g00785 | Cpe-Chr12:7092240 | Cpe17g00642 | Cpe-Chr17:5221863 | 3.89E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50814 | PF00847 | AP2 | 1.80E-12 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00642 | K09285 | - | csv:101206499 | 339.347 |