Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00642 ATGGAAGGCCAATCAAGAGAAGAGTATATTAGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGGAGATGGGAAGCTCGAATCGGCAGAGTGTTCGGCAACAAATATCTTTACCTTGGAACATACGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATAACCGTCCATCAAGTCCAAACGCCGGTGACACTGCCTCAGAATTTGACCCCAAATCCCCTCTCGAAATTACCTTTCCGTCGCAATCTTCGAGCTCCGACCAACCAACTACCGCGCCGGAACCTCACGGCGGCCACCCCTCATCGTCGTCGGCGACGTTGGAGCTGCTACTCCATTCGTCAAAATTTAAACACATACTAGAAAGGACATCCGCCGCTGAGACTCCACAGACGCTGCCGGAATCCGTCCGGCCGCGTCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCTGACGACATTGCCGGAAGCGACGACGGAATTTTCGGGTACCTAAACTCGTATTTTCCTTCATCAGTTTTTCATAGCGCACTCGATGCTTAA 705 49.65 MEGQSREEYIRYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNNRPSSPNAGDTASEFDPKSPLEITFPSQSSSSDQPTTAPEPHGGHPSSSSATLELLLHSSKFKHILERTSAAETPQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGYLNSYFPSSVFHSALDA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5221863 5227204 - Cp4.1LG17g08570.1 Cpe17g00642 483960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00642 234 MobiDBLite consensus disorder prediction 95 152 - -
Cpe17g00642 234 MobiDBLite consensus disorder prediction 124 152 - -
Cpe17g00642 234 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Cpe17g00642 234 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Cpe17g00642 234 Gene3D AP2/ERF domain 25 86 IPR036955 GO:0003700|GO:0006355
Cpe17g00642 234 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Cpe17g00642 234 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Cpe17g00642 234 MobiDBLite consensus disorder prediction 100 114 - -
Cpe17g00642 234 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 212 - -
Cpe17g00642 234 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 212 - -
Cpe17g00642 234 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00642 Cpe-Chr17:5221863 Cpe18g00584 Cpe-Chr18:6264092 6.07E-78 dispersed
Cpe12g00785 Cpe-Chr12:7092240 Cpe17g00642 Cpe-Chr17:5221863 3.89E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50814 PF00847 AP2 1.80E-12 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00642 K09285 - csv:101206499 339.347