Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00648 TTCAAAGAAAGAATTAAATTTGTGTTGTTGGAACAGGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGATGGTCAAGTTACAGATATTAGTGGCAAAAATGCCACCATAATCACCTCCATGGATAAAACTATTGTTGCGCCAATTTCGAGTGTATATCCGAAAGACACGGAGGCGCCGCCGGCTGGGGTTGACGACATGACGAAATTGGCATACCTCCATGAACCTGGAGTTTTGCATAATCTAGCTTGTCGATTTTCTCTCAACGAGATATACACTTACACTGGGAATATTCTAATCGCCGTGAATCCTTTCCGGAGATTGCCGCATTTGTATGATATTCACATGATGGAGCAGTACAAAGGAGCTACATTCGGCGAGCTTAGTCCTCATCTTTTCGCAGTTGCAGATGCTTGCTATAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATCTTAGTAAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACGAAGATGCTCATGAGATATCTAGCGTTCATGGGAGGCAGATCAGATACAGAAGGAAGAACAGTCGAGCAGCAGGTTTTGGAGTCCAACCCTGTGTTGGAAGCATTTGGAAATGCCAAGACCGTCAAAAACAACAATTCGAGTCGTTTTGGAAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACGTACCTTCTCGAACGGTCGCGTGTTTGCCAAGTCTCGGATCCTGAGAGAAACTACCATTGTTTTTACATGCTTTGTGCAGCGCCACCAGAAGATGTCAAGAAATACAAGTTAGCAGACCCAAGGACATATCGTTATCTTAATCAAACAAATTGTTATGAAGTGGCGAACGTTGATGATTCAAGAGAGTACTTAGAGACGAGAAACGCCATGGATGTTGTAGGAATCAGCCAGGATGAACAGGATGCTATATTTCGTGTTGTAGCTGCAATACTGCATCTTGGAAACATTGAATTCATGAAAGGGAAGGAATTTGACTCCTCCAAAGTGAAAGATGAGAAGTCAAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCATTGGAACATTCACTCTGTCAGCGTGTCATAGTGACTCCTGATGGGAAAATTACAAAGCCATTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCAAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATTGGTGTGCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTACACGAAAGAAGAAATTAACTGGAGCTATGTTGAGTTTGTGGATAATCAGGATGTCCTTGATCTCATTGAGAAGAAACCTGGAGGTATCATTGCCCTGCTTGATGAAGCCTGCATGTTTCCAAAGTCAACACATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAAACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTAGATAAAAACAAGGACTACGTAGTAGCAGAACATCAGGCTCTTCTGAATGCCTCACAATGCTCTTTTGTTGCAAATCTTTTCCCTCCACTTCCTCAGGAGAGCTCAAAGCAATCTAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTCCAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATCAGATGTGTGAAGCCTAACACAGTCTTGAAGCCTGGAATCTTTGAAAACTTCAATGTGTTGAACCAATTGAGATGTGGGGGAGTTCTCGAGGCAATTAGAATTAGCTGTGCAGGATATCCAACGAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCAGACGGGACTGATGAAAAATCAGCATGCATGGCAATATGCGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTGAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATATTGGCCAATGCTGTCAGACGCATCCAGCGGCAAATTCGAACCCTTCTAACTAGGAAAGAGTTTCTCACCATGAGGAGAGCTACAATTCATATGCAGAAACATTGGAGAGCGCAACTTGCTCGTAAGCTGTATGAGAAAATGAGGAGAGAAGCTGCTTCAATCCGTATACAGAAGCATGCACGTGCTCATGCAGACAGAAAAGCTTACACAAAATTACTTGCGTCAGCTATAGTTATTCAAACTGGTATGCGAGCAATGGCCGCTAGAAATGAGTTCAGACACAGAAGAAGAACAAAGGCAGCTATTATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGGAAAGAGCTTAAAAAACTAAAGATGGCTGCAAGAGAAACAGGGGCACTCAAGGAGGCCAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACGTGGCGCCTGGAATTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAAGTTGCAAAGTTACAAAGTGCTTTGGAAGAAATGCAAGGGCAGCTGGATGAAGCCAATGCTGCAATCATACGCGAGAGAGAAGAAGCAAAATTGGCCATAGAACAAGCTCCACCGGTCATTAAGGAAGTGCCCGTGGTTGATGAGACCAAGCTGGAAATGCTGAGAAATCACAATGAAGAACTTGAGGGGGTGGTTGGAGAGCTGAAGAAGAAACTTGAGGAATTCGAAGAAAAGTTTGCTGAAGTAGAAAAGGAAAGTAAAGCTACACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAGCTTCAGGAGACTATTGAGAGATTGGAATCAAATTTATCTAGCCTCGAGTCCGAGAACCAGGTTCTACGTCAGCAGGCTTTGGTTGCTGCAGACAATGAATCCCTCTCTGATGAACTGCAAGCCCTCAAGAGTAAGATCGGAAGTCTAGAGGCGGAGAATGAAGTTCTTCGCAACCGGACAGTAGTTGTTGAGCACGTGTCTATTCCTGCAGGGGTGCTTGCAGAAAGCAAGCCTTTGGATAACGGGCAGGCTTTAGATAACGGGCAGGCTTTAGATAACGGGCATATTGTGGAAGAAGAGATTAAAGCAACTAAGGAGATTAAAGCAACTAAGGCAAGAATGAATTTTCCTATACGAGAAATCAGTAAATGCCCGTCTGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAACGTTTTGACAAAGGCAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGATAAGACCAATATATTCGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGTGACCTTGCATATTGGCTTTCAACCACTTCTACCCTTTTCTATCTTCTTCAAAGTTCACTCAAGGCAGCCAATACAAGTACTGCGGCTTCACATCGCAACCGTACTTCCCCTTCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAATGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCATTGCTTTTTAAGCAACATTTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAACTTGAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAATATTGTTGCAAAACAACAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAATCTAGACCAGACCTTGGTTATAATGTCTGAAAATCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTTCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTGTTACTACGACGTGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACCAAAGCTACTGATACGTATGCTGGCTCTTCCTGGAATGAACTTCAACACATAAGACAGGCAGTAGGATTTCTGGTGTTACACCAGAAGTCCCAGAAAAGTTTGAATGAGATAACAGATGAATTGTGCCCGATTCTGAGCATCCCGCAAATATATCGCATAGGAACGATGTTCTGGGACGACAAATATGGAACTCAGGGGTTATCTCCTGATATAATTGGAAGAATGAGAGTCCTATTAGCAGAAGACTCCATCAACATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATAGAAGAAGTATTCCGGTCCTTCGGCGCGGTTAACCTGTCCGATATCGACCCGCCGCCGCTCATAAGACAAAGATCTGATTTCCATTTTCTACTGCAGCAAGTGAGTGAATGA 4740 42.57 FKERIKFVLLEQGTPVNIIVGSHVWVEDPEDAWIDGQVTDISGKNATIITSMDKTIVAPISSVYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLADPRTYRYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIEFMKGKEFDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGKITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTNFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASQCSFVANLFPPLPQESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGTDEKSACMAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTLLTRKEFLTMRRATIHMQKHWRAQLARKLYEKMRREAASIRIQKHARAHADRKAYTKLLASAIVIQTGMRAMAARNEFRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQSALEEMQGQLDEANAAIIREREEAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGVVGELKKKLEEFEEKFAEVEKESKATLKEAEEAQLKSMQLQETIERLESNLSSLESENQVLRQQALVAADNESLSDELQALKSKIGSLEAENEVLRNRTVVVEHVSIPAGVLAESKPLDNGQALDNGQALDNGHIVEEEIKATKEIKATKARMNFPIREISKCPSENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEADKTNIFDRIIHTIRSSIESQENISDLAYWLSTTSTLFYLLQSSLKAANTSTAASHRNRTSPSTLFGRMAYGLRSSSMGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNNLDQTLVIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTYAGSSWNELQHIRQAVGFLVLHQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGRMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEVFRSFGAVNLSDIDPPPLIRQRSDFHFLLQQVSE 1579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5286872 5297242 + Cp4.1LG17g08460.1 Cpe17g00648 483966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00648 1579 Coils Coil 1066 1093 - -
Cpe17g00648 1579 CDD MYSc_Myo11 87 730 IPR036018 -
Cpe17g00648 1579 ProSiteProfiles Dilute domain profile. 1206 1521 IPR002710 -
Cpe17g00648 1579 ProSiteProfiles IQ motif profile. 864 893 IPR000048 GO:0005515
Cpe17g00648 1579 ProSiteProfiles IQ motif profile. 745 772 IPR000048 GO:0005515
Cpe17g00648 1579 PANTHER MYOSIN 30 1572 - -
Cpe17g00648 1579 Gene3D - 263 321 - -
Cpe17g00648 1579 ProSiteProfiles IQ motif profile. 793 819 IPR000048 GO:0005515
Cpe17g00648 1579 PANTHER MYOSIN-12 30 1572 - -
Cpe17g00648 1579 Coils Coil 983 1059 - -
Cpe17g00648 1579 Pfam Myosin N-terminal SH3-like domain 20 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 ProSiteProfiles Myosin motor domain profile. 73 742 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 Pfam Myosin head (motor domain) 75 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 CDD MyosinXI_CBD 1159 1544 IPR037975 GO:0007015
Cpe17g00648 1579 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 19 68 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 PRINTS Myosin heavy chain signature 493 521 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 PRINTS Myosin heavy chain signature 440 468 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 PRINTS Myosin heavy chain signature 103 122 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 PRINTS Myosin heavy chain signature 160 185 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 PRINTS Myosin heavy chain signature 207 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 SMART iq_5 792 814 IPR000048 GO:0005515
Cpe17g00648 1579 SMART iq_5 767 789 IPR000048 GO:0005515
Cpe17g00648 1579 SMART iq_5 815 837 IPR000048 GO:0005515
Cpe17g00648 1579 SMART iq_5 863 885 IPR000048 GO:0005515
Cpe17g00648 1579 SMART iq_5 840 862 IPR000048 GO:0005515
Cpe17g00648 1579 SMART iq_5 744 766 IPR000048 GO:0005515
Cpe17g00648 1579 SMART DIL_2 1396 1503 IPR002710 -
Cpe17g00648 1579 Gene3D - 678 740 - -
Cpe17g00648 1579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 796 IPR027417 -
Cpe17g00648 1579 Coils Coil 933 967 - -
Cpe17g00648 1579 Pfam DIL domain 1397 1500 IPR002710 -
Cpe17g00648 1579 ProSiteProfiles IQ motif profile. 768 797 IPR000048 GO:0005515
Cpe17g00648 1579 Gene3D Myosin VI head, motor domain, U50 subdomain 323 612 - -
Cpe17g00648 1579 SMART MYSc_2a 67 743 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00648 1579 ProSiteProfiles IQ motif profile. 816 845 IPR000048 GO:0005515
Cpe17g00648 1579 Pfam IQ calmodulin-binding motif 866 885 IPR000048 GO:0005515
Cpe17g00648 1579 Pfam IQ calmodulin-binding motif 769 788 IPR000048 GO:0005515
Cpe17g00648 1579 Gene3D - 450 634 - -
Cpe17g00648 1579 Coils Coil 887 921 - -
Cpe17g00648 1579 Gene3D - 744 794 - -
Cpe17g00648 1579 Gene3D - 843 892 - -
Cpe17g00648 1579 Gene3D - 795 842 - -
Cpe17g00648 1579 Gene3D Kinesin motor domain 76 673 IPR036961 -
Cpe17g00648 1579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 796 893 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00790 Cpe17g00648 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00725 Cpe-Chr2:4617228 Cpe17g00648 Cpe-Chr17:5286872 1.58E-128 dispersed
Cpe06g00718 Cpe-Chr6:4471672 Cpe17g00648 Cpe-Chr17:5286872 6.27E-126 dispersed
Cpe07g00975 Cpe-Chr7:8800348 Cpe17g00648 Cpe-Chr17:5286872 2.13E-103 dispersed
Cpe08g00366 Cpe-Chr8:2271354 Cpe17g00648 Cpe-Chr17:5286872 0 dispersed
Cpe11g00352 Cpe-Chr11:1901097 Cpe17g00648 Cpe-Chr17:5286872 0 dispersed
Cpe12g01163 Cpe-Chr12:9542854 Cpe17g00648 Cpe-Chr17:5286872 0 dispersed
Cpe17g00648 Cpe-Chr17:5286872 Cpe17g00969 Cpe-Chr17:7393051 0 dispersed
Cpe12g00790 Cpe-Chr12:7142836 Cpe17g00648 Cpe-Chr17:5286872 2.00E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00648 K10357 - csv:101207221 2781.13