Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00660 | ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCAAGCCCTTTCGTTTCGTCGACAAGCAACGGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCCGATGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACGAATCCTTACCAAGGATTTCCATGGCCGTCGTCCGAAAATGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCACGGATAGATCAAATGAAAAATAGCGTTCTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCACGAGCAAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACTAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTGACCTCCACCGTCGCCACAGCCACCGCCGGCGGAGTAAAACTACCTGGTTTCGCCATTTCTGGTGGAGCAAGCTCCTCCTCTTTCCCATTTTCTGCAAAAACACAGACCCACCAGTCAACAACTTCATGA | 957 | 48.8 | MELGLSLGDTPKPFRFVDKQRQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSAASSFQMEFGLYGGGGNISSRIDQMKNSVLNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTVATATAGGVKLPGFAISGGASSSSFPFSAKTQTHQSTTS | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5354676 | 5357948 | + | Cp4.1LG17g08420.1 | Cpe17g00660 | 483978 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00660 | 318 | MobiDBLite | consensus disorder prediction | 44 | 65 | - | - | |
Cpe17g00660 | 318 | SMART | HOX_1 | 161 | 223 | IPR001356 | GO:0003677 | |
Cpe17g00660 | 318 | MobiDBLite | consensus disorder prediction | 78 | 93 | - | - | |
Cpe17g00660 | 318 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
Cpe17g00660 | 318 | ProSitePatterns | 'Homeobox' domain signature. | 194 | 217 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe17g00660 | 318 | Pfam | Homeobox associated leucine zipper | 219 | 253 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe17g00660 | 318 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 1 | 297 | - | - | |
Cpe17g00660 | 318 | Pfam | Homeodomain | 163 | 217 | IPR001356 | GO:0003677 | |
Cpe17g00660 | 318 | PANTHER | - | 1 | 297 | - | - | |
Cpe17g00660 | 318 | SMART | halz | 219 | 262 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe17g00660 | 318 | SUPERFAMILY | Homeodomain-like | 155 | 220 | IPR009057 | - | |
Cpe17g00660 | 318 | Gene3D | - | 169 | 215 | - | - | |
Cpe17g00660 | 318 | MobiDBLite | consensus disorder prediction | 142 | 168 | - | - | |
Cpe17g00660 | 318 | ProSiteProfiles | 'Homeobox' domain profile. | 159 | 219 | IPR001356 | GO:0003677 | |
Cpe17g00660 | 318 | Coils | Coil | 225 | 255 | - | - | |
Cpe17g00660 | 318 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Cpe17g00660 | 318 | CDD | homeodomain | 163 | 220 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00728 | Cpe-Chr8:5725956 | Cpe17g00660 | Cpe-Chr17:5354676 | 4.34E-68 | dispersed | |
Cpe17g00660 | Cpe-Chr17:5354676 | Cpe19g00701 | Cpe-Chr19:5513364 | 2.08E-74 | dispersed | |
Cpe12g00802 | Cpe-Chr12:7237738 | Cpe17g00660 | Cpe-Chr17:5354676 | 6.47E-173 | wgd | |
Cpe17g00660 | Cpe-Chr17:5354676 | Cpe02g01596 | Cpe-Chr2:13425334 | 5.49E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50816 | PF00046 | Homeodomain | 1.80E-15 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00660 | K09338 | - | csv:101221600 | 504.982 |