Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00660 ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCAAGCCCTTTCGTTTCGTCGACAAGCAACGGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCCGATGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACGAATCCTTACCAAGGATTTCCATGGCCGTCGTCCGAAAATGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCACGGATAGATCAAATGAAAAATAGCGTTCTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCACGAGCAAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACTAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTGACCTCCACCGTCGCCACAGCCACCGCCGGCGGAGTAAAACTACCTGGTTTCGCCATTTCTGGTGGAGCAAGCTCCTCCTCTTTCCCATTTTCTGCAAAAACACAGACCCACCAGTCAACAACTTCATGA 957 48.8 MELGLSLGDTPKPFRFVDKQRQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSAASSFQMEFGLYGGGGNISSRIDQMKNSVLNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTVATATAGGVKLPGFAISGGASSSSFPFSAKTQTHQSTTS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5354676 5357948 + Cp4.1LG17g08420.1 Cpe17g00660 483978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00660 318 MobiDBLite consensus disorder prediction 44 65 - -
Cpe17g00660 318 SMART HOX_1 161 223 IPR001356 GO:0003677
Cpe17g00660 318 MobiDBLite consensus disorder prediction 78 93 - -
Cpe17g00660 318 MobiDBLite consensus disorder prediction 1 111 - -
Cpe17g00660 318 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Cpe17g00660 318 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Cpe17g00660 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 297 - -
Cpe17g00660 318 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Cpe17g00660 318 PANTHER - 1 297 - -
Cpe17g00660 318 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Cpe17g00660 318 SUPERFAMILY Homeodomain-like 155 220 IPR009057 -
Cpe17g00660 318 Gene3D - 169 215 - -
Cpe17g00660 318 MobiDBLite consensus disorder prediction 142 168 - -
Cpe17g00660 318 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Cpe17g00660 318 Coils Coil 225 255 - -
Cpe17g00660 318 MobiDBLite consensus disorder prediction 148 168 - -
Cpe17g00660 318 CDD homeodomain 163 220 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00728 Cpe-Chr8:5725956 Cpe17g00660 Cpe-Chr17:5354676 4.34E-68 dispersed
Cpe17g00660 Cpe-Chr17:5354676 Cpe19g00701 Cpe-Chr19:5513364 2.08E-74 dispersed
Cpe12g00802 Cpe-Chr12:7237738 Cpe17g00660 Cpe-Chr17:5354676 6.47E-173 wgd
Cpe17g00660 Cpe-Chr17:5354676 Cpe02g01596 Cpe-Chr2:13425334 5.49E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50816 PF00046 Homeodomain 1.80E-15 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00660 K09338 - csv:101221600 504.982