Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00682 ATGACAGACCCTAATTACTCCAACTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCCTCTCCTCCGCCACTCTCTCCGCCGCAAGCCCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGATCAACCTTCCTCCAGCACCACCAACAACCACGAAAACGCCCTCACCCTTGATTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTCTCCGCCTCCTTCCCGCCGGACCCCACCGGAAAAACCCACCACGACGACCTCTCCCCCCTCCCTTCCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTCGGTCCTTCTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTTAATCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATATAGGAAAGGACCAGAGTCCCTAAAAGGAACACAACCGACCGCCATGCTACGCTTGCCGTGCTACTGCTGCGCACCCGGGTGCAAACACAACATCGACAACCCGACGTCGCGACCGCTCAAGGACTTTCGCACGCTCCAGACACATTACAAACGTAAGCATGGAATCAAGCCTTTTAGTTGTAGAAAATGTAGCAAAGCGTTTGCTGTAAAAGGCGATTGGCGAACGCATGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTTAAACATAAACGCTCGCTTAAAGACCATATCAAGGCCTTTGGACAAGGTCATGGCTCGTTGGGTCTTGATTATTTTGATGACGATAACGAACCCGCATCCGAAGTTGAACAAGATGGCACCGTTGTTCATTAA 843 51.01 MTDPNYSNFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALTLDFCLSCPTSDLDLSASFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPTSRPLKDFRTLQTHYKRKHGIKPFSCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGQGHGSLGLDYFDDDNEPASEVEQDGTVVH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5457674 5459151 - Cp4.1LG17g08210.1 Cpe17g00682 484000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00682 280 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Cpe17g00682 280 Gene3D Classic Zinc Finger 118 141 - -
Cpe17g00682 280 Gene3D Classic Zinc Finger 181 254 - -
Cpe17g00682 280 MobiDBLite consensus disorder prediction 75 94 - -
Cpe17g00682 280 Pfam Zinc finger, C2H2 type 119 138 IPR013087 -
Cpe17g00682 280 PANTHER ZINC FINGER PROTEIN WIP2 19 275 IPR043584 GO:0003700|GO:0010468
Cpe17g00682 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Cpe17g00682 280 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Cpe17g00682 280 SUPERFAMILY beta-beta-alpha zinc fingers 186 223 IPR036236 -
Cpe17g00682 280 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 275 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00821 Cpe17g00682 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00682 Cpe-Chr17:5457674 Cpe19g00081 Cpe-Chr19:598309 4.77E-105 dispersed
Cpe12g00821 Cpe-Chr12:7326664 Cpe17g00682 Cpe-Chr17:5457674 4.31E-148 wgd
Cpe16g00887 Cpe-Chr16:8355545 Cpe17g00682 Cpe-Chr17:5457674 7.98E-113 wgd
Cpe17g00682 Cpe-Chr17:5457674 Cpe05g00504 Cpe-Chr5:2977391 2.42E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50820 PF00096 zf-C2H2 0.002 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00682 - - csv:101209911 452.595