Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00688 ATGGAAACAGGAGAATCTGTGGCAAAGGTTATGAAGAACATGGGCCCCCACACCTGTCAAATATGTGGAGATAACGTTGGGAAGACCATTGAGGGTGAAGTGTTTGTTGCTTGTGATGTTTGCACATTTCCTGTTTGCAGACCATGTTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAATGTAAAAGCAGATACAAGAGACACAAAGCACAAGATCTCCCGCCTCCAAATTATGACAAAGAAGTTTCTTTAAATCACATTCCCTTGCTCACCAATGGGCAGGTTTCCGGAGAACTTTCAGCTGCATCGCCCGAGCATCATTCAATGGCATCACCTGGACATCCTCGTGGGAAGCCGATATATTCTCTTTCTTACGCAGCTGATATCAACCAATCACCTAATGTGCGAGACGTGGACGCTACAAAGGAGTATAATTCATCAGGGCTAGGCAACGTAGCGTGGAAAGAGAGAGTCGATGGCTGGAAGATGAAACAAGAGAAGAATGCTGTTCCAATGAGCACAGCCCATGCTGCATCCGAAAGGGGAGGTGGAGATATCGATGCCTGCACGGATGTGCTTGTCGATGATTCCTTATTAAATGATGAAGCTCGTCAGCCTCTCTCGCGAAAGGTTTCTATTCCATCATCAAGGATAAACCCTTACCGATTGGTGATTGTTCTTCGGCTCGTGATTATTTGCTTTTTCTTGCACTACCGAATAACGAATCCTGTACGTAATGCATACGCTCTATGGCTGGTATCTGTTATATGTGAGATCTGGTTTGCAATATCCTGGATATTAGATCAGTTTCCGAAGTGGTTTCCTGTAAACCGTGAGACATATCTCGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCGTCACAGCTTGCTGCCGTTGACATTTTCGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACTGTGCTATCCATTCTCGCTGTTGACTACCCCGTTGACAAGGTCTCGTGCTATGTCTCTGATGACGGAGCTGCCATGTTGACATTCGAAGCATTATCTGAGACATCAGAGTTTGCAAGATCATGGGTGCCTTTCTGCAAGAAGTACAGCATTGAGCCTCGGGCTCCCGAATGGTACTTCGCTCAGAAAATTGATTACTTGAAGGATAAAGTTCATCCATCGTTTGTCAAAGATCGAAGAGCGATGAAGAGAGACTACGAGGAGTTTAAGGTTCGGATCAACGGCCTGGTATCGAAGGCGCAGAAGGTTCCCGAAGAAGGATGGATTATGCAAGATGGAACGCCATGGCCTGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTCGGGTGTCAGCTGTTCTTACGAATGGCCCATTCTTGTTGAATCTCGACTGTGATCACTACATAAACAATAGCAAGGCGTTGAGGGAAGCAATGTGTTTCATGATGGATCCAAACCTAGGAAAATATGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATCGATAAGAACGATCGATACGCCAACCGTAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGTATTCAAGGACCAGTTTATGTGGGTACTGGATGTGTTTTCAATAGAACTGCACTGTATGGTTACGAACCTCCTCTCAAACCGAAGCGTCGGAAACCAGGGGTTCTGTCGTTACTCTGTGGTGGATCGAGAAAGAAAAATTCAAAATCAAGTAAAAAGAGTCCCGACAAGAAGAAGTCGAACAAGCACGTGGACCCGACAGTGCCAATTTTCAATCTCGACGATGTTGAAGAAGTCGTTGAAGCTGTTTTCGTTGCCTCGACCCTTATGGAAAACGGCGGCATTCCTCAATCTGCAACACCTGAATCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGCGGATACGAAGACAAAACCGACTGGGGATCTGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATCCTTACAGGATTCAAAATGCATGCTCGTGGTTGGCGGTCGATTTACTGCATACCAAAACGTCCTGCCTTTAAAGGGTCGGCGCCTATCAATCTTTCAGATCGACTAAACCAAGTTCTTCGATGGGCGCTCGGTTCCGTGGAGATTCTTCTGAGTAGGCATTGCCCTATGTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAAAGGTTTGCGTATGTAAACACGACAATCTATCCGATCACCGCTGTTCCTCTTCTCATGTACTGTACGTTACCAGCCGTGTGTCTGCTGACAAACAAATTCATTATTCCCCAGATTAGTAACATTGCAAGTATATGGTTTATATCCCTCTTCCTCTCCATCTTCGCAACGGGAATTCTCGAGATGAGATGGAGCGGAGTCGGGATCGACGAGTGGTGGAGAAACGAACAATTCTGGGTGATCGGTGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTTTGCTCAAGGTTCTAGCTGGAATCGACACGAACTTCACCGTCACGTCCAAGGCATCGGATGAAGATGGCGACTTCGCCGAGCTTTACTTGTTCAAATGGACAACTCTTCTCATTCCACCAACTACACTCCTTATAGTAAACCTGGTTGGTGTCGTTGCAGGCATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCGTTGTTTGGCAAGCTATTCTTTGCCTTTTGGGTGATCATCCATCTCTATCCCTTCTTGAAAGGTTTAATGGGTCGTCAAAACAGAACGCCGACCATCGTCGTCGTG 2793 45.72 METGESVAKVMKNMGPHTCQICGDNVGKTIEGEVFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKAQDLPPPNYDKEVSLNHIPLLTNGQVSGELSAASPEHHSMASPGHPRGKPIYSLSYAADINQSPNVRDVDATKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLVIICFFLHYRITNPVRNAYALWLVSVICEIWFAISWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKRDYEEFKVRINGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKRRKPGVLSLLCGGSRKKNSKSSKKSPDKKKSNKHVDPTVPIFNLDDVEEVVEAVFVASTLMENGGIPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPMWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVV 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5498729 5504466 - Cp4.1LG17g08020.1 Cpe17g00688 484006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00688 931 Pfam Cellulose synthase 453 931 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe17g00688 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Cpe17g00688 931 PANTHER CELLULOSE SYNTHASE 125 453 - -
Cpe17g00688 931 PANTHER CELLULOSE SYNTHASE 611 931 - -
Cpe17g00688 931 SUPERFAMILY Nucleotide-diphospho-sugar transferases 318 777 IPR029044 -
Cpe17g00688 931 MobiDBLite consensus disorder prediction 563 595 - -
Cpe17g00688 931 CDD mRING-HC-C4C4_CesA_plant 17 67 - -
Cpe17g00688 931 SUPERFAMILY RING/U-box 5 75 - -
Cpe17g00688 931 PANTHER CELLULOSE SYNTHASE 6 84 - -
Cpe17g00688 931 PANTHER CELLULOSE SYNTHASE 453 602 - -
Cpe17g00688 931 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 84 - -
Cpe17g00688 931 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 125 453 - -
Cpe17g00688 931 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 453 602 - -
Cpe17g00688 931 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 611 931 - -
Cpe17g00688 931 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 382 553 IPR029044 -
Cpe17g00688 931 Pfam Zinc-binding RING-finger 9 73 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01182 Cpe-Chr10:8775512 Cpe17g00688 Cpe-Chr17:5498729 0 dispersed
Cpe17g00688 Cpe-Chr17:5498729 Cpe18g00576 Cpe-Chr18:6213170 0 dispersed
Cpe17g00688 Cpe-Chr17:5498729 Cpe19g00060 Cpe-Chr19:447906 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00688 K10999 - csv:101206590 1754.95