Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00726 ATGAAGCCAAGTGTCGATGAGGAAACGTTAACGTGGCTTCACAGGCAAGTCTCTGTAACGGCGTTACGTGCTCCGTCTCCTTCCACGAATTTACTCCCTCCCGCGGCGGCTCCCACTATATATCCCTTCTTCATTGCCGACTTCTTTATTACTGAAATTTCCTCATATCATTATTCTCAAATTTCCATAGCAGAGAGAGAGAAAAATCCGATTCCAACTCCAACTTACATTTCTGCAGATTATAGCGATTTTGATCTCTCAGTTGAAGAATCTGATTTTTTGGTAAATGTAAAAATGGTGGCTGAAACTAAGGTTGTTGTGTGTTCGAAGAGCCTCCCTGTTTTGGAGGTCCCTTATTTCGGTAAAGAGGCTCATCTTGTTGATGAAATGAAGTCCATCGACGGTGCGATTCCCGTTGATCCGACTCTCGATCGTGTTCGCGCTTCCGAATCGGTTTGTTCGAGTTCTCAATCGGATGTGAAGCAAATTCCAGATACCGACGTCGATTCGATGGAGCAGAGGGAATTTCCAAGTCTCCGGTCGGGGAGCTTTGCTGATATTGGACCTAGGAGAGACATGGAGGATGAACACATAAGGATTGACGATCTGTGTTCACAGTTAGGCTCGCTCTTTAAGTTTTCTAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATGGAGGACCTGAAGCAGCAGCTTATATAAGAAAGAATATTCTTAGACTCTTTTTTGAAGATGTTAGGTTTCCTCACATGCCTGATGTTGATGAACTCCGGCCGGAGGAGATTGAAAATTTCTTACGAGAAGCATTTCTTCTGGCCGATCAAGCTTTGGCCGATGATTCTGGTATTAGTAATTTGTCTGGGACGACGGCCCTCACTGCTCTTGTGCTTGGAAGGCTTCTAATGGTGGCTAATGTTGGAGATTGCCGGGCTGTTCTTAGTCGGAAGGGAGAGGCAGTAGATATGTCTCAAGACCACAGGCCAATTTATTCACCGGAGAAGGAACGAGTAGAAGAGTTGGGTGGCTTCGTCGACGGTGGCTATCTTAACGGCCTTTTATCAGTTTCCAGAGCCTTGGGGGATTGGGACATGAAGCTCCTCCCCCATGGTTCTCCTTCACCCCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTAACAGAGGAGGATGAGTTCTTAATCATAGCCTGCGACGGGATTTGGGACGTGATGTCGAGCCAACATGCAGTCGATGTAGTTCGCCGGGGACTTCAGCGACATGACAACCCTGAGCGTTGCGCTCGAGATCTCGTCCTGCGGGCTTTGGGACTAGACTCATTCGATAATCTCACCGTTGTTATTGTTTGCTTCTCTAGTTTCCATAGGGACAACTCTCCACAACCACAGCAACGAAAATTGAGATACTGCAGCCTCTCTGCTCAAGCCCTTTGTAGCTTGCAGAGATCGTTGGATAAGAGTGGATGCCAATGA 1473 47.11 MKPSVDEETLTWLHRQVSVTALRAPSPSTNLLPPAAAPTIYPFFIADFFITEISSYHYSQISIAEREKNPIPTPTYISADYSDFDLSVEESDFLVNVKMVAETKVVVCSKSLPVLEVPYFGKEAHLVDEMKSIDGAIPVDPTLDRVRASESVCSSSQSDVKQIPDTDVDSMEQREFPSLRSGSFADIGPRRDMEDEHIRIDDLCSQLGSLFKFSKPSGFYGVFDGHGGPEAAAYIRKNILRLFFEDVRFPHMPDVDELRPEEIENFLREAFLLADQALADDSGISNLSGTTALTALVLGRLLMVANVGDCRAVLSRKGEAVDMSQDHRPIYSPEKERVEELGGFVDGGYLNGLLSVSRALGDWDMKLLPHGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQHAVDVVRRGLQRHDNPERCARDLVLRALGLDSFDNLTVVIVCFSSFHRDNSPQPQQRKLRYCSLSAQALCSLQRSLDKSGCQ 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5769558 5772535 - Cp4.1LG17g07610.1 Cpe17g00726 484044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00726 490 SMART PP2C_4 170 449 IPR001932 -
Cpe17g00726 490 CDD PP2Cc 180 451 IPR001932 -
Cpe17g00726 490 ProSitePatterns PPM-type phosphatase domain signature. 219 227 IPR000222 GO:0043169
Cpe17g00726 490 Pfam Protein phosphatase 2C 190 442 IPR001932 -
Cpe17g00726 490 ProSiteProfiles PPM-type phosphatase domain profile. 180 451 IPR001932 -
Cpe17g00726 490 SMART PP2C_SIG_2 195 451 IPR001932 -
Cpe17g00726 490 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 99 470 - -
Cpe17g00726 490 PANTHER PROTEIN PHOSPHATASE 2C 99 470 IPR015655 GO:0004722|GO:0006470
Cpe17g00726 490 SUPERFAMILY PP2C-like 173 453 IPR036457 -
Cpe17g00726 490 Gene3D - 159 458 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00869 Cpe17g00726 CCT
Cpe12g00869 Cpe17g00726 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00026 Cpe-Chr2:140957 Cpe17g00726 Cpe-Chr17:5769558 5.08E-99 dispersed
Cpe06g00012 Cpe-Chr6:44878 Cpe17g00726 Cpe-Chr17:5769558 4.37E-102 dispersed
Cpe07g01145 Cpe-Chr7:10019791 Cpe17g00726 Cpe-Chr17:5769558 3.21E-56 dispersed
Cpe11g01025 Cpe-Chr11:8632574 Cpe17g00726 Cpe-Chr17:5769558 2.80E-06 dispersed
Cpe17g00726 Cpe-Chr17:5769558 Cpe14g00210 Cpe-Chr14:1175110 6.30E-39 dispersed
Cpe12g00869 Cpe-Chr12:7607690 Cpe17g00726 Cpe-Chr17:5769558 0 wgd
Cpe17g00084 Cpe-Chr17:475767 Cpe17g00726 Cpe-Chr17:5769558 3.73E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00726 K14803 - csv:101216626 632.869