Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00747 ATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGACAGAGTGCTCGCAAAGGAGTTCATCGCGAACTTCGCCGACGCCAATGGCGACGCGAAGTATTTAAACATTCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAGAACACTCGACGATATATTGGAATTTTTGCCGATGCGATCGATGAGCTCATGCCAGAGCCAACAGAGGCGTTTATAGATGATGATCATGACATATTAATGACTCAAAGGTCCGATGATGGGCCGGATACTGCCGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATTAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCTTCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACGCGCTGTTCAGATGTAAAGCCATTGATGCAAGTGGCTGTTTATACATGCGAAGACTGTGGTTTCGAGATATATCAGGAGGTAACAGCTCGAGTCTTCATGCCATTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACCTAATTCTTCAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACGAGGAAGGTAGCTCCAGGTGATGTTGTCGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAATAAACTTTCAAGGTCGTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTGGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCGAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGTGTCTACACGACTGGCAAAGGTAGCAGTGGGGTTGGTCTAACGGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTATTAGCTGATATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACTTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGACGATACGATCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCTAGACATGTTGTTTATGTTCATCAGAATAGAGAATCTCCTGCCCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCGAGAAGATTGTCTCCTTACGTTCCCAAGGATCTAGAGGAGTATATTGCCAGTGCCTATTCCAGTATTCGACAGGAAGAAGCTAAATCTAACACTCCACATTCATATACCACAGTCCGAACTCTACTAAGTATTCTCCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGCGATGTCGATGAGGCTCTACGGTTAATGCAAATGTCAAAATTTTCTCTATACTCGGATGACCGTCAAAAATCCGGTCTAGATGCTATCTCAGATATCTATTCAATCCTGCGTGATGAAGCTGCCAGAACGAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATCTCTAGGAAGGGATACAGTGAAGCACAGCTAAAAGAATGTTTGGAGGAGTACGCAGCCTTGAATGTGTGGCAAATTCATCCACACACCTTCGACATTCGGTTTATAGATGCCTGA 2175 43.82 MSAMKDTGALDFTADRVLAKEFIANFADANGDAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTADNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLSRSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5904660 5910897 - Cp4.1LG17g07440.1 Cpe17g00747 484065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00747 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Cpe17g00747 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Cpe17g00747 724 MobiDBLite consensus disorder prediction 108 127 - -
Cpe17g00747 724 Gene3D - 16 106 - -
Cpe17g00747 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 702 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 Pfam MCM OB domain 149 279 IPR033762 -
Cpe17g00747 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 Gene3D - 176 230 - -
Cpe17g00747 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 702 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cpe17g00747 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cpe17g00747 724 Pfam MCM N-terminal domain 20 138 IPR027925 -
Cpe17g00747 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Cpe17g00747 724 Gene3D - 149 277 IPR012340 -
Cpe17g00747 724 Gene3D - 317 649 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00111 Cpe-Chr4:991728 Cpe17g00747 Cpe-Chr17:5904660 6.29E-116 dispersed
Cpe08g00006 Cpe-Chr8:55997 Cpe17g00747 Cpe-Chr17:5904660 2.86E-101 dispersed
Cpe15g00556 Cpe-Chr15:6397771 Cpe17g00747 Cpe-Chr17:5904660 4.56E-114 dispersed
Cpe17g00747 Cpe-Chr17:5904660 Cpe19g01218 Cpe-Chr19:8191358 3.35E-110 dispersed
Cpe12g00890 Cpe-Chr12:7737505 Cpe17g00747 Cpe-Chr17:5904660 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00747 K02210 - csv:101219064 1391.71