Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00796 ATGGCTACCTCCATTAAAGTCCATGGAGTCCCCTTTTCCGGACCCACATGCAGAGTTCTAGCTTGTCTCTACGAGAAAGAACTTGAATACGAGTTCGTCAAACTCAAGATGCACGAAGGGGAACACAAGAAACAGCCATTTCTCTCCATCAATCCGTTTGGTCAAGTTCCTGGGTTCCAAGATGGAGATTTGACGCTTTTTGAATCCAGGGCAATCACGCAGTATATCGTAGGGAATTATGCTAATAATGGAACCCAATTGATTTTCCAAGACCCCAAGAAAGCGGCGATCGTATTGACATGGATTGAAGTGGAGAGCCACCATTATGATCCACCAGCCTCGAAGCTGGTCCTCGAGCTCTGCTTGAAGCCTTTGCTTGGGTGGGGCGAGACAGATGCTGCAGTAGTTGAGCAAAGTGAAGCTGAGCTAGCTAAAGTTCTTGATATCTATGAGGATAGGCTGGCTCAGTCCAAATACTTGGGAGGTGAGTCCTTCAGTTTAGCTGATTTGCACCATCTCCCAACCATAGACTACTTATTTGGGACACAGATGAAGAAACTGTTTGAATCTCGGCCCCATGTCAATGCATGGGCGGCTGATATCATGGGCAGGCCTGCTTGGGCTAAGGTGCTTGCTTTGCGCTAA 645 47.6 MATSIKVHGVPFSGPTCRVLACLYEKELEYEFVKLKMHEGEHKKQPFLSINPFGQVPGFQDGDLTLFESRAITQYIVGNYANNGTQLIFQDPKKAAIVLTWIEVESHHYDPPASKLVLELCLKPLLGWGETDAAVVEQSEAELAKVLDIYEDRLAQSKYLGGESFSLADLHHLPTIDYLFGTQMKKLFESRPHVNAWAADIMGRPAWAKVLALR 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6241127 6242323 + Cp4.1LG17g07080.1 Cpe17g00796 484114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00796 214 SFLD Glutathione Transferase (cytosolic) 4 212 IPR040079 -
Cpe17g00796 214 SUPERFAMILY GST C-terminal domain-like 75 212 IPR036282 -
Cpe17g00796 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Cpe17g00796 214 CDD GST_C_Phi 93 211 IPR034347 -
Cpe17g00796 214 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Cpe17g00796 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 213 - -
Cpe17g00796 214 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 213 - -
Cpe17g00796 214 SFLD Main.5: Phi-like 4 212 - -
Cpe17g00796 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 214 IPR010987 -
Cpe17g00796 214 Gene3D Glutaredoxin 3 88 - -
Cpe17g00796 214 Pfam Glutathione S-transferase, C-terminal domain 114 205 IPR004046 -
Cpe17g00796 214 Gene3D - 91 214 - -
Cpe17g00796 214 SUPERFAMILY Thioredoxin-like 4 84 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00796 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101212536 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00796 Cpe-Chr17:6241127 Cpe03g01560 Cpe-Chr3:12097087 1.05E-08 dispersed
Cpe17g00796 Cpe-Chr17:6241127 Cpe17g00797 Cpe-Chr17:6242852 2.04E-107 tandem
Cpe07g00339 Cpe-Chr7:2214690 Cpe17g00796 Cpe-Chr17:6241127 5.26E-58 transposed
Cpe12g00950 Cpe-Chr12:8066961 Cpe17g00796 Cpe-Chr17:6241127 3.43E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g260 Blo05g00314 . . . . . . . . . . . . . Sed09g1225 Cpe17g00796 . Bhi09g00856 Tan06g0841 Cmetu01g1052 . Hepe03g1912 . . Cla09g00566 Cam09g0601 Cec09g0585 Cco09g0579 Clacu09g0600 . Cre09g0574 Cone17ag0506 Cone20ag0932 . . Lsi02g02380 Csa07g01816 . Cme01g02340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01670 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe12g00950 . 1 209 Glutathione S-transferase Gene Family AT4G02520 59.9 2.0e-65 246.1
Cpe17g00797 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.1e-63 240.4
Cpe17g00796 . 5 210 Glutathione S-transferase Gene Family AT4G02520 56.9 9.4e-60 227.3
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT2G02930 61.0 6.1e-67 251.1
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 3.7e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT2G02930 57.6 7.2e-60 227.6
Cpe17g00797 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.7 2.1e-61 233.0
Cpe12g00950 . 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.6e-58 223.4
Cpe17g00796 . 6 207 Glutathione S-transferase Gene Family AT1G02950 54.2 1.8e-57 219.9
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02930 59.5 2.5e-65 245.7
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02930 57.1 3.6e-64 241.9
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02930 55.6 1.6e-59 226.5
Cpe12g00950 . 1 210 Glutathione S-transferase Gene Family AT1G02920 61.0 1.0e-66 250.4
Cpe17g00797 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 9.6e-65 243.8
Cpe17g00796 . 5 211 Glutathione S-transferase Gene Family AT1G02920 57.0 6.4e-61 231.1
Cpe17g00797 . 1 214 Glutathione S-transferase Gene Family AT2G47730 56.7 6.8e-68 254.6
Cpe12g00950 . 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 7.0e-65 244.6
Cpe17g00796 . 4 214 Glutathione S-transferase Gene Family AT2G47730 55.2 6.2e-61 231.5
Cpe10g00926 . 3 210 Glutathione S-transferase Gene Family AT3G09270 54.1 5.4e-66 248.1
Cpe01g00281 . 675 885 Glutathione S-transferase Gene Family AT1G69930 50.5 7.4e-58 221.1
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59670 52.1 2.0e-55 213.0
Cpe01g00281 . 675 882 Glutathione S-transferase Gene Family AT1G59700 54.0 3.9e-59 225.3
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10370 60.8 4.7e-73 271.6
Cpe01g00281 . 675 889 Glutathione S-transferase Gene Family AT1G10360 58.1 9.1e-69 257.3
Cpe01g00578 . 438 653 Glutathione S-transferase Gene Family AT1G78380 64.4 1.3e-83 306.6
Cpe01g01970 . 1 204 Glutathione S-transferase Gene Family AT1G78380 54.4 2.0e-60 229.6
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78380 53.3 1.1e-58 223.8
Cpe01g00578 . 444 652 Glutathione S-transferase Gene Family AT1G78370 60.8 1.1e-74 276.9
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78370 52.2 4.8e-59 224.9
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78370 52.3 3.4e-57 218.8
Cpe01g00578 . 438 651 Glutathione S-transferase Gene Family AT1G78340 60.3 6.7e-77 284.3
Cpe01g01970 . 1 201 Glutathione S-transferase Gene Family AT1G78340 50.7 1.0e-56 217.2
Cpe14g00390 . 1 173 Glutathione S-transferase Gene Family AT1G78340 51.4 2.7e-54 209.1
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G78320 51.8 1.7e-47 186.4
Cpe01g00578 . 438 655 Glutathione S-transferase Gene Family AT1G17180 62.8 2.4e-82 302.4
Cpe14g00390 . 1 178 Glutathione S-transferase Gene Family AT1G17180 55.7 1.3e-64 243.4
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G17180 54.1 5.5e-63 238.0
Cpe03g01662 . 1 156 Glutathione S-transferase Gene Family AT1G17180 52.2 3.0e-40 162.5
Cpe01g00578 . 440 653 Glutathione S-transferase Gene Family AT1G17190 55.6 1.6e-70 263.1
Cpe01g00578 . 440 657 Glutathione S-transferase Gene Family AT3G43800 55.4 6.3e-70 261.2
Cpe01g00578 . 441 655 Glutathione S-transferase Gene Family AT1G53680 56.7 1.7e-67 253.1
Cpe01g01970 . 1 207 Glutathione S-transferase Gene Family AT1G53680 55.5 9.9e-60 227.3
Cpe05g01048 . 52 222 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Cpe05g01046 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 1.0e-60 230.3
Cpe08g00486 . 79 242 Glutathione S-transferase Gene Family AT2G02390 52.7 7.7e-45 177.6
Cpe05g01046 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 7.0e-74 274.2
Cpe05g01048 . 11 220 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Cpe08g00486 . 36 241 Glutathione S-transferase Gene Family AT2G02380 53.6 6.4e-59 224.6
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41210 69.2 2.2e-92 335.9
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41210 68.2 3.5e-66 248.8
Cpe14g00502 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 9.2e-89 325.1
Cpe01g00659 . 1 179 Glutathione S-transferase Gene Family AT5G41240 65.9 2.5e-62 237.3
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 4.8e-89 324.7
Cpe08g01131 . 5 237 Glutathione S-transferase Gene Family AT3G55040 60.9 4.3e-79 292.0
Cpe08g01131 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.6 2.5e-93 339.0
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G19570 61.2 3.0e-74 275.4
Cpe01g00205 . 303 476 Glutathione S-transferase Gene Family AT1G19570 73.1 3.1e-71 265.4
Cpe01g01113 . 1 182 Glutathione S-transferase Gene Family AT1G19570 58.0 4.8e-64 241.5
Cpe01g00205 . 303 478 Glutathione S-transferase Gene Family AT1G75270 75.7 1.4e-76 283.1
Cpe03g00710 . 66 273 Glutathione S-transferase Gene Family AT1G75270 63.6 1.4e-76 283.1
Cpe01g01113 . 1 183 Glutathione S-transferase Gene Family AT1G75270 62.4 1.0e-69 260.4
Cpe03g00710 . 55 275 Glutathione S-transferase Gene Family AT5G16710 76.9 6.0e-101 364.4
Cpe01g00205 . 304 477 Glutathione S-transferase Gene Family AT5G16710 62.1 6.5e-63 238.0
Cpe01g01113 . 3 181 Glutathione S-transferase Gene Family AT5G16710 52.9 4.1e-57 218.8
Cpe06g00604 CCT 1 267 Glutathione S-transferase Gene Family AT1G77290 68.9 5.8e-107 384.4
Cpe02g00572 CCT 1 270 Glutathione S-transferase Gene Family AT1G77290 67.0 3.2e-105 378.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00796 Cpe_Chr17 FPKM 0.0 0.0 9.100368 6.667882 3.461823 2.940742 3.736389 14.264705 13.585835 16.945267