Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00799 ATGAGGAGAAAATCCAAAACCCTAAGAGCGACGATGACGAGAACGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTCCAGTTAGGGCAGGTTTCTCTCGCCCCTCTCCACCACCAACTATCCTCTTCCACTGCCGCTTGCTTCCAAGACTTGCCTGAATCTGAAGCAATGGCGACGGTTAACGATTCTGGCGCTCTCCCTTCCTCGTCTACTAACTTCGAGGACAGAGATTTCATTCTTAGCCAGGATTTCTTCTGCACCCCTGACTATATCACTCCGGACAACCAAAATCTGCTGAATGGCGTGGATTGCTACAAGGAAAGCACTCCTTGCCCCAAATCTCCAGAGAAGATTAATACTGTTAAAACTAAGAGAAAAATACGTGATGGTGTTTTAGTACATCCTCTGAGTCCAAGTTTGTCTGGCCGTGAACAAGTTGTGGAGCTAGGAAATGACACTTTTGGAACAGATGATGAAGATATGGAGAAAGAGACAATGGCAATGCCAAAGAAACAAAATTATGTTTCTCAATCTGCTGTTGCTTTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAATCCATACGTGAATGATGCTTCAGACATAGGTGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGATTTCTTTCCCGCACTGTTTAGTGGAGATGGTCTTTCAAGATACCACACCGATTTTCATGAGATAAAGAAAATAGGAACTGGAAATTTTAGCCGTGTTTTCAAGGTATTGAAGAGAATTGATGGTTGCTTATATGCTGTTAAACAAAGCACAAGACCATTGCATCAAGACATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATCGTTGGATACTACTCTTCGTGGTTTGAAAATGAGCAACTCTACATTCAAATGGAACTCTGTGATTGTAGTTTATCCACTGGCAGGTATTCTCACCCGTTCTCTGAGGCTGATGCACTGAAAGCCTTGCATCAGATTGCAAAAGCATTGCTGTTTATGCACGAGAAAGGAGTAGCTCATTTAGACGTGAAACCTGACAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGACTTTGGGTGCGCTACTCTTCTTGATAAAAGCCTACCAATTGAGGAGGGCGATGCACGCTATATGCCTCAAGAGATTCTGAATGAGAGATACGATTATCTTGACAAGGTTGATATATTCTCTTTGGGAGCTGCTATTTATGAGGTTGTGAGAGGTTCGACATTTCCAGAAACACATTTCATGAATCTAAAGGAGGGAAAATTGCCACTCTTTCCTTGTCATTCATTGCAATTTCAAAACTTAATCAAGGCGATGGTGGATCCCGACCCAGCACGACGGCCTTCAGCTAGGGAAGTTCTTCAGAATCCCATATTTGATAAGGTCAGAAATCATCCAAAATCATAG 1470 42.59 MRRKSKTLRATMTRTRKKMKGTLTRHLQVQLGQVSLAPLHHQLSSSTAACFQDLPESEAMATVNDSGALPSSSTNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDCYKESTPCPKSPEKINTVKTKRKIRDGVLVHPLSPSLSGREQVVELGNDTFGTDDEDMEKETMAMPKKQNYVSQSAVALRCRVMPPPCMKNPYVNDASDIGVDPFGNQRTKCADFFPALFSGDGLSRYHTDFHEIKKIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLHQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSTGRYSHPFSEADALKALHQIAKALLFMHEKGVAHLDVKPDNIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEVVRGSTFPETHFMNLKEGKLPLFPCHSLQFQNLIKAMVDPDPARRPSAREVLQNPIFDKVRNHPKS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6251313 6255467 + Cp4.1LG17g07130.1 Cpe17g00799 484117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00799 489 SMART serkin_6 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00799 489 Pfam Protein kinase domain 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00799 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Cpe17g00799 489 Gene3D Transferase(Phosphotransferase) domain 1 317 485 - -
Cpe17g00799 489 Gene3D Phosphorylase Kinase; domain 1 228 316 - -
Cpe17g00799 489 PANTHER BNAA08G27310D PROTEIN 409 485 - -
Cpe17g00799 489 PANTHER BNAA08G27310D PROTEIN 19 396 - -
Cpe17g00799 489 ProSiteProfiles Protein kinase domain profile. 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00799 489 SUPERFAMILY Protein kinase-like (PK-like) 231 484 IPR011009 -
Cpe17g00799 489 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Cpe17g00799 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 396 - -
Cpe17g00799 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 409 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00799 Cpe-Chr17:6251313 Cpe08g00898 Cpe-Chr8:7088877 1.09E-21 dispersed
Cpe17g00799 Cpe-Chr17:6251313 Cpe03g01516 Cpe-Chr3:11877354 4.71E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62955 PF00069 Pkinase 7.30E-49 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00799 K06632 - csv:101213255 860.522