Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00870 ATGGGCAACTCCGATTACGTGTATCCATCGGCGGCGACGGAGGGCGGCGGCGAATGCTTACACAGGGCGGCGATTCCACCGCCGCAGCCGTTCGTTAAGTCGCTGAAGAACTCTTTAAAGGAGACATTCTTCCCGGACGACCCACTACGGCAGTTCAAAAACCAACCGGCGGCGAGGAAAGTGCTGTTGGTTTTACAGTACTTTTTCCCGGTGTTGGAGTGGGGACCACGTTATCGTTTAGCGCTACTGAAATCGGATCTTATCTCCGGTATCACCATTGCTAGTCTCGCCATTCCTCAGGGGATTAGCTATGCCAAGTTGGCTAATTTACCCCCCATCCTCGGCCTTTATTCCAGTTTTATTCCGCCGCTGATTTACGCAATGATGGGAAGCTCGAAGGACTTGGCCGTCGGAACCGTGGCGGTGGCGTCGCTTCTCATTAGCGCGATGTTAGGGGCAGAGGTTAGCCCCGCTCAAAACCCAACTCTTTACCTCCATCTCGCGTTCACCGCCACGTTCTTCGCCGGAGTCTTTCAAGCCTCGTTAGGCCTGTTAAGACTAGGATTCATCGTGGATTTCCTATCACATGCCACCATAGTTGGGTTCATGGCGGGTGCAGCTACAGTGGTGTGTTTACAACAGCTGAAAGGCATCCTTGGGCTAACCCATTTCACTCACGCGACTGATCTCGTCTCGGTTCTCCGCTCTGTTTTTAGTCAAGTCGATCAGAGCAAGAAAAAGCCGAAGTTGTTTTGGATATCGGCAATGGCACCTTTGACGTCGGTGATTTTGGGAAGCCTTCTAGTGTTTCTCACTCATGCGGAAAAACACGGCGTTGAAGTGATCGGTGAATTGAAGAAAGGGCTAAATCCAGTGTCGATTACGGATTTAGTGATGGTGTCGCCTCATCTTTCCATCGCTATTAAAACCGGCATCATCACGGGTGTCATTGCTCTCGCGCATTACAACATCGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACCACTGGCCCGTTTTCCCGATCGGCCGTGAATTTCAATGCAGGATGCAAAACCGCGGTTTCCAACGTGGTAATGGCCATGGCTGTGATGTTGACGCTGCTGTTTTTGACTCCTCTGTTTCATTACACACCTCTGGTCGTGCTTTCTTCCATTATCATTTCCGCCATGCTTGGTCTCATCGATTACGACGCCGCTATTCACTTGTGGAAAGTCGATAAGTTCGATTTCCTTGTCTGTATTGGTGCTTATGCTGGTGTCGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGTGTCCTACAACAACCCATTACTACTCACTTTTAGCTACATTTGTTATGACTATTGACAACATTGGGGACTACTTGTTGCAGGTGGCTATATCGCTGCTCAGACTACTTTTGTTCGTCGCAAGGCCGAGGACGCTTGTGCTCGGAAACCTTCCTAATTCCACTGTTTACAGGAATGTCGAGCAATACCCGAATGCTGGGAATGTTCCCGGCATTCTCATACTTGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATTAAGGCTTCAGGAGATAGTACCTTACAATATGTCGTATTAGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGGTTGAAGATAGTTTTGGCGAACCCGGGAGCTGAGGTGATGAAGAAGCTGGACAAGGGGAAGTTCATTGAGAGCCTGGGACACGAATGGATCTATCTTACGGTGGCTGAAGCTGTAGCAGCCTGCAACTATATGCTTCACTCTTGCAAACCAAACCCTGAAACTGATGAGAAAACAGAAGCATGGAACAGTGTGTAA 1959 48.65 MGNSDYVYPSAATEGGGECLHRAAIPPPQPFVKSLKNSLKETFFPDDPLRQFKNQPAARKVLLVLQYFFPVLEWGPRYRLALLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISAMLGAEVSPAQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQVDQSKKKPKLFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITDLVMVSPHLSIAIKTGIITGVIALAHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNFNAGCKTAVSNVVMAMAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIACPTTTHYYSLLATFVMTIDNIGDYLLQVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNAGNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGDSTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPNPETDEKTEAWNSV 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6736358 6742658 - Cp4.1LG17g06280.1 Cpe17g00870 484188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00870 652 Pfam STAS domain 507 625 IPR002645 -
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 14 243 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 244 447 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cpe17g00870 652 CDD STAS_SulP_like_sulfate_transporter 507 622 - -
Cpe17g00870 652 ProSitePatterns SLC26A transporters signature. 112 133 IPR018045 GO:0008271|GO:0008272
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 465 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cpe17g00870 652 SUPERFAMILY SpoIIaa-like 513 630 IPR036513 -
Cpe17g00870 652 Pfam Sulfate permease family 83 243 IPR011547 GO:0016021
Cpe17g00870 652 Pfam Sulfate permease family 245 427 IPR011547 GO:0016021
Cpe17g00870 652 ProSiteProfiles STAS domain profile. 506 629 IPR002645 -
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 3.1 244 447 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 3.1 14 243 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cpe17g00870 652 Gene3D STAS domain 486 632 IPR036513 -
Cpe17g00870 652 PANTHER SULFATE TRANSPORTER 3.1 465 646 IPR030311 GO:0008272|GO:0009507|GO:0015116
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01044 Cpe17g00870 CCT
Cpe12g01044 Cpe17g00870 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00570 Cpe-Chr17:4661197 Cpe17g00870 Cpe-Chr17:6736358 0 dispersed
Cpe17g00870 Cpe-Chr17:6736358 Cpe18g00445 Cpe-Chr18:5470892 0 dispersed
Cpe12g01044 Cpe-Chr12:8684374 Cpe17g00870 Cpe-Chr17:6736358 0 wgd
Cpe17g00870 Cpe-Chr17:6736358 Cpe03g01459 Cpe-Chr3:11624141 7.82E-35 wgd
Cpe17g00870 Cpe-Chr17:6736358 Cpe08g00279 Cpe-Chr8:1795968 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00870 K17471 - csv:101222260 1095.11