Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00872 ATGTTTGCTACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTTGTGTGTGAAATTTGCAACAAAGGGTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGTCATAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGCGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCAGCTAACCAATTCGCCATCGCGGCCGAGGTTGAGGCGGCGGGGGCGGAGGGTGGGGCGGCTACCTCCACCGCCTCCGCCTCCGCGCAATCTCTCTTCCCTTTTGGTAGCTTTAATCAATTCCCTAGCTCTTCGCTGTCACGGCCGCCACAAACCTATATGTCGCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAACTTTGCCCCTCGCCGGCTCCTCCCCAAGCACCGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCATCCCCACCACCACCAGAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAGCCTCACCGTTTAGGAACCTCCACGTGTCGGTGAATCCTGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCCCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTCGGTTTGACTGGCGACGGGAACGGCGGCGGAGGTGGCAGTGGAGCGATGCAGGTTAGCATGAGTGTCAAGGATATGCTAACGTACGCAGGAGGATTGGAGATTTTTAAGCCTCATAATAATAATAATAATAATAATAATAATAATAATAATCATAGTGCTTTTGGTTTTGCCGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1452 47.52 MFATTMSNSTSLSEEATVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFAIAAEVEAAGAEGGAATSTASASAQSLFPFGSFNQFPSSSLSRPPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPTLPLAGSSPSTATNNPFGIIQDHHRRHHPHHHQKAGSSSSSSMIASPFRNLHVSVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIPEFAAPTHMDSLTHQLGPDYATWQKTDRLTRDFLGLTGDGNGGGGGSGAMQVSMSVKDMLTYAGGLEIFKPHNNNNNNNNNNNNHSAFGFAEPAANETWDC 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6760175 6763251 + Cp4.1LG17g06320.1 Cpe17g00872 484190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00872 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 462 - -
Cpe17g00872 483 MobiDBLite consensus disorder prediction 302 325 - -
Cpe17g00872 483 SMART c2h2final6 100 130 IPR013087 -
Cpe17g00872 483 SMART c2h2final6 59 81 IPR013087 -
Cpe17g00872 483 SMART c2h2final6 135 155 IPR013087 -
Cpe17g00872 483 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 21 462 - -
Cpe17g00872 483 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Cpe17g00872 483 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Cpe17g00872 483 Gene3D Classic Zinc Finger 38 107 - -
Cpe17g00872 483 Gene3D Classic Zinc Finger 128 193 - -
Cpe17g00872 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00408 Cpe-Chr16:5562431 Cpe17g00872 Cpe-Chr17:6760175 1.69E-110 dispersed
Cpe17g00872 Cpe-Chr17:6760175 Cpe10g00600 Cpe-Chr10:3504977 1.62E-110 dispersed
Cpe12g01047 Cpe-Chr12:8706432 Cpe17g00872 Cpe-Chr17:6760175 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50831 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00872 K25870 - csv:101208253 662.529