Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00875 ATGAGCAAATTCGAATCCAGTTACCATGAGATTCTACTTCTTGACATCGGCAAAGCCGCCCGAAGGAGGTGGAGAATTGCCTTTGCAGTAATATCCTCAATTCGGGCCATGCTTTCTCTAGCAGTGTCAAGAAGAAAAGATCATTGCAGTTTAATCAACTGTGAGATCTTGGAGGAAGGTTCATATGAGGAACAGATAGTCTACACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACAAAAACTTGGAAGCTTACTGTGAGCATGGGAAAGCTCCAGCCATTGCTAAGTCTCTAGGAACAAATCCAGAGAAGGGAATCAAGGATAATGATGATGTTGTGAATGAACGACGTCAAGTATTCGGTTCGAATACTTACCACAAGCGGCCTCCCAAGAGTTTCTTTCATTTTGTGGTGGAAGCTTTCAAGGACACCACCATTGTCATTTTACTTATATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGGACAAGAAGGGTGGTATGAAGGCGGGAGCATATTTGTAGCTGTTGCGCTGGTGGTTGTTGTTTCAGCCATCAGCAACTTCAGACAGGAGATTCAATTCGAGAAGTTATCAAAAATAAGTAACAACATCAAAGTGGAGGTAGTGAGAGATGGAAGACGCATAGAAGTTTCCATCTTCAATATAGTGGTTGGAGATGTCGTGGTTCTAAACCTTGGGGACCAAATTCCAGCAGATGGGTTGTTCTTAAGTGGTCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGATACTCAATTTAACGGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTGAAATGCTGGTGACATCAGTGGGAATGGACACGGCCTGGGGCGAGATGATGAGCTCGATATCTCGAGATTCTGAGGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTGACCACTACTATAGGAAAGGTAGGCCTCTCAGTCGCCTTCATAGTCCTTGTTGTCATGTTGGCGCGCTATTTCACAGGAAACACAACCGATGATTTTGGGAACACAGAGTACAATGGTCGAAAAACAGACGTAGATGATGTGATCAATGCAGTTACCCGTATAGTTGCTGCTGCAATTACCATAGTAGTTGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTTACATTAACACTCGCTTATTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGGAACTTTCTGCTTGTGAAACGATGGGATCAGCAACTGTGATTTGCACGGACAAAACAGGAACTTTGACATTAAACAAAATGAAAGTTACCAAATTTTGGCTCGGCCAAGGGTTCATTGAGGAAGAAAACCCTTCCCACACCATAGCAGAGACTGTTAGTGAGTTAATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCTCCAGAATCCGAAATTGAAATCTCTGGTAGTCCAACTGAGAAAGCCATTCTCTCTTGGGCGGTCTCAGAATTCAGTATGGACATGGTAAAGTTGAAAAATGCATATTCCATTCTTCATGTGGAAACCTTCAATTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCTAGTTACATTGAAAGAAATGGGAGAACATATCCCTTAGATAACGAAAGCCGAAGAAAACTTGAGAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAAGAGGAAAAAAATAGCATGCCAACTGCCTCAGACGTGAAAGAAGATGACTATATATTAATGGGAATAGTTGGCATGAAAGACCCATGTAGAAAAGGGGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATCACAGGTGACAACGTTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTCGACCACAACACCGCATGCAGAGGAGAAGTAATAGAAGGCTCTGAATTCCGAAACTACTCAAGTGAAGAAAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGATGGCACGAATGACGCACCCGCTCTAAAAGAGGCTGACATTGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATCGTTATCTTGGATGATAACTTCACTACAGTAGTCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAGAAATTCATCCAATTTCAATTGACAGTCAACGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCTGGAGAGGTTCCCTTAACAGCAGTCCAATTGTTGTGGGTGAACCTCATAATGGATACACTGGGTGCTCTTGCACTTGCTACTGAAAGACCAAATGATGAACTAATGCACAAGCCTCCAGTGGGAAGAACAGAACCCCTAATAACAAATATTATGTGGAGGAACCTTCTAGCCCAAGCTTTATATCAAATAGCAATACTCCTAATTTTCCAATTCCAAGGAAGCAACATCTTCAATGTAAGTGAAATGGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTCAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATCTATTTCTAGGAATTGTGGGAGTAACGGTTGTTCTACAGGTTATCATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGCTGGCAGTGGGGACTTTGCATTGCTATTGCAGCTGTTTCTTGGCCTATTGGCTGGATTGTCAAACTCTTTCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA 3048 42.06 MSKFESSYHEILLLDIGKAARRRWRIAFAVISSIRAMLSLAVSRRKDHCSLINCEILEEGSYEEQIVYTKDDQKKLIEMVKNKNLEAYCEHGKAPAIAKSLGTNPEKGIKDNDDVVNERRQVFGSNTYHKRPPKSFFHFVVEAFKDTTIVILLICAALALGFGIKEHGGQEGWYEGGSIFVAVALVVVVSAISNFRQEIQFEKLSKISNNIKVEVVRDGRRIEVSIFNIVVGDVVVLNLGDQIPADGLFLSGHSLQVDESSMTGESDHVILNLTENPFLLSGTKVVDGYGEMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTTIGKVGLSVAFIVLVVMLARYFTGNTTDDFGNTEYNGRKTDVDDVINAVTRIVAAAITIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQGFIEEENPSHTIAETVSELINQGVGLNTTGSVYQPSPESEIEISGSPTEKAILSWAVSEFSMDMVKLKNAYSILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSSYIERNGRTYPLDNESRRKLENIIQGMAASSLRCIAFAYRQISEEEEKNSMPTASDVKEDDYILMGIVGMKDPCRKGVKKAVETCKSAGVSIKMITGDNVFTAKAIATECGILDFDHNTACRGEVIEGSEFRNYSSEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVVTVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFNVSEMVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKLFPVSDKPFLSYFKCFKG 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6800597 6803953 + Cp4.1LG17g06180.1 Cpe17g00875 484193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00875 1015 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 60 1001 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cpe17g00875 1015 Pfam haloacid dehalogenase-like hydrolase 433 758 - -
Cpe17g00875 1015 SMART Cation_ATPase_N_a_2 89 164 IPR004014 -
Cpe17g00875 1015 Gene3D - 142 998 - -
Cpe17g00875 1015 PRINTS H+-transporting ATPase (proton pump) signature 590 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00875 1015 PRINTS H+-transporting ATPase (proton pump) signature 744 760 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00875 1015 PRINTS H+-transporting ATPase (proton pump) signature 776 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00875 1015 SUPERFAMILY HAD-like 433 849 IPR036412 -
Cpe17g00875 1015 Pfam E1-E2 ATPase 211 413 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 636 647 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 658 668 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Cpe17g00875 1015 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Cpe17g00875 1015 SFLD Haloacid Dehalogenase 417 797 - -
Cpe17g00875 1015 Pfam Cation transporter/ATPase, N-terminus 95 158 IPR004014 -
Cpe17g00875 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 824 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00875 1015 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 379 462 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe17g00875 1015 SUPERFAMILY Calcium ATPase, transduction domain A 210 309 IPR008250 -
Cpe17g00875 1015 Gene3D - 445 643 IPR023299 GO:0000166
Cpe17g00875 1015 SFLD p-type atpase 417 797 IPR044492 -
Cpe17g00875 1015 Gene3D - 114 311 - -
Cpe17g00875 1015 PANTHER CALCIUM-TRANSPORTING ATPASE 20 988 - -
Cpe17g00875 1015 PANTHER CATION TRANSPORTING ATPASE 20 988 - -
Cpe17g00875 1015 CDD P-type_ATPase_Ca_PMCA-like 116 877 - -
Cpe17g00875 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 442 640 IPR023299 GO:0000166
Cpe17g00875 1015 Pfam Cation transporting ATPase, C-terminus 829 999 IPR006068 -
Cpe17g00875 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Cpe17g00875 1015 Gene3D - 432 789 IPR023214 -
Cpe17g00875 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 1001 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00200 Cpe-Chr6:1073086 Cpe17g00875 Cpe-Chr17:6800597 0 dispersed
Cpe07g00954 Cpe-Chr7:8657439 Cpe17g00875 Cpe-Chr17:6800597 0 dispersed
Cpe15g00693 Cpe-Chr15:7479062 Cpe17g00875 Cpe-Chr17:6800597 3.07E-107 dispersed
Cpe17g00412 Cpe-Chr17:3084095 Cpe17g00875 Cpe-Chr17:6800597 0 dispersed
Cpe17g00875 Cpe-Chr17:6800597 Cpe19g00675 Cpe-Chr19:5367407 0 dispersed
Cpe17g00875 Cpe-Chr17:6800597 Cpe07g00763 Cpe-Chr7:6709252 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00875 K01537 - csv:101220140 1688.7