Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00877 ATGGAAGAGGTTGAAGAAGCTAATAGAGAAGCTGTGGAGAGTTGTCATAAAGTGTTGAATCTATTGACTCTCGCGTTGCCTCAAGATCGTCAATCCAAGATTCAGAGTTGTTTAATGGCGGAAACTGGAGCGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTAATTCTTCTTCTTCTGGGTTGGGGCATGCAAGGGTCAGGAAAAACAGGGTTAAGCCACCCTTCTCTTCCTCTTCCTCCTCTTCTCCTCTTCCCCAATCCATGTTCTTACAAACTTCTTCCCCCGATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCATATGGGTCCTCTTTCTTTGGGGAATCCATGTCTGGAATTGAGCTCAAATGCTAAAAGTTGTTCAATCCAACAACCTCAGTCTACTTCCCATCATTTTCTTCAGAACAGGATGTTGTTGAATAATCCTAATCCTAATGCTCCACAGCCTGAAATGGTGTATCTTAGGAGCCACAGTGGTATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACGCCCCGATCTTCCGATCAGAATTCACACCATAGGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGTACTGGGAGATGTCACTGCTCTAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCCGCCATAAGTAACAAGCTTGCAGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGGAAGCACGTCGAGAGGTGTGTCGAGGAACCGTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATAGCTTCTCAGTCTGAAAATACTTGA 1020 44.9 MEEVEEANREAVESCHKVLNLLTLALPQDRQSKIQSCLMAETGAAVFKFRKVLCLLNSSSSGLGHARVRKNRVKPPFSSSSSSSPLPQSMFLQTSSPDCRMDLLQGRNLHMGPLSLGNPCLELSSNAKSCSIQQPQSTSHHFLQNRMLLNNPNPNAPQPEMVYLRSHSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSGFHLIGTPRSSDQNSHHRRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCVEEPSMLIVTYEGEHNHPRIASQSENT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6822550 6824535 + Cp4.1LG17g06230.1 Cpe17g00877 484195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00877 339 Gene3D WRKY domain 257 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe17g00877 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 339 IPR044810 GO:0003700
Cpe17g00877 339 MobiDBLite consensus disorder prediction 218 232 - -
Cpe17g00877 339 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe17g00877 339 MobiDBLite consensus disorder prediction 74 91 - -
Cpe17g00877 339 Pfam Plant zinc cluster domain 224 269 IPR018872 -
Cpe17g00877 339 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe17g00877 339 MobiDBLite consensus disorder prediction 65 91 - -
Cpe17g00877 339 MobiDBLite consensus disorder prediction 212 233 - -
Cpe17g00877 339 Pfam WRKY DNA -binding domain 273 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe17g00877 339 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 339 - -
Cpe17g00877 339 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00053 Cpe17g00877 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00044 Cpe-Chr5:230004 Cpe17g00877 Cpe-Chr17:6822550 3.20E-89 dispersed
Cpe15g00053 Cpe-Chr15:343905 Cpe17g00877 Cpe-Chr17:6822550 4.81E-124 dispersed
Cpe16g00152 Cpe-Chr16:3550772 Cpe17g00877 Cpe-Chr17:6822550 8.94E-55 dispersed
Cpe16g00153 Cpe-Chr16:3563077 Cpe17g00877 Cpe-Chr17:6822550 8.94E-55 dispersed
Cpe17g00877 Cpe-Chr17:6822550 Cpe05g01181 Cpe-Chr5:8145093 7.11E-55 dispersed
Cpe12g01060 Cpe-Chr12:8808822 Cpe17g00877 Cpe-Chr17:6822550 1.55E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50832 PF03106 WRKY 3.30E-26 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00877 - - csv:101216822 533.872