Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00897 ATGGGAACAGCCTCTGTACAATGTCTAATTAACAGTATTTCCAGATTCATTCATCTAGTTTCATGCCATACTACAAAGTCTTTGCCTCTTCCTAAGAACTGCAAGAATCTTGCTGTTGTCTTGAAACATCTGAAACTCGTGCTTGATGATGTCGTTAGTCTCAAACTATCCTCCGATGAGTTACTTTATAGAGAATGTGAGTCTCTGGATATCGCTGTTAATGACGCTCGGGAGTTCATTGAAAACTGGTGTCCAAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAGATTCAAAGCTCTTTACAAGAGATTTGTGAGATTGTATGGAAGTTGTCGGAATCAGCATCATGTAGCTCAAGTCTAAATGCTGTTCAGAAATGTCTTGAAGGTCTTCAATCATTGAAGCAGGAAAGGATATCTGAATCTATAGAAGAGGCTTTAATTAGTCAAAGGAGTGGCATTGGTCCGAACTCCGAAGATCTTCTAAAAATTATCGAAGTTCTTCATTTGATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCAGTCGAAAAGGAGAGAATCGATGCTGAACAAAACAATGCGAAAGAGCAGCTATATCGGATCAACGAAATTATGGATCTAATTATCCGTATACGAGATTGGATGATTAGAAAGGACTATTTTCATGGGATAAATGGAGTATCAGTTCCTTCATACTTCCGCTGTCCATTGTCGTTGGAACTGATGCTTGATCCAGTAATTGTGGCGTCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATAGATAGTGGGCTGAACATCTGCCCCAACACTCATCAGACGCTCACGCATACAAATCTCATTCCCAATTACACTGTTAAAGCCATGATTTTGAGTTGGTGCGATGAAAACAAACTGAATATTTCCAGTTTATCATCGTTGGTTCAATTGTCTCAGCAGGATTCAAATCGAAGTGATAGCTCTCGATCATCTCCTGAAGTTGAAAAGGGTTCTAACAAGCAAAATGGGGACGTTTTTACTAATTTAATTGGGGGGAAATCTAATGAAGGCCAGAGAAACGAAACCGAAAAGTTTGACCACCCTTCCCCTCAGCAGTCATATATCTACAGCAGGAGTGTATCAGCCTCCAGTGCCTTATCTAGCATTGATTATGTTCCATCGGCACTTAATGAGGTGTTGAAGATATCAACTAAACACGAAATCACATCAGAACATCCTACTGCATCTCATAATGAAGCATCGGGGTTGAATTCATCATTAGAAGGTGGACAATTACAGGCTTGTAAAACAGAAACAGGCATGGTGGAGAATGGAAACTGTAATAGTACAACCTGTAACTTAGTTCCAGTCGAACCTGAATCCGATAACTCATCGGGGGATTTGCATATCAAGAAATTAGTTGCAGACCTTCAGAGCCAAAAGGATGAAGTTAAAATGAAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTATAATAGGCCAATGTGGGGCTATAGGCCCCTTACTTTCACTGTTATATTCAGATGGAAAGCAGATACAAGAGCATGCAGTGACAGCTCTCTTAAACCTGTCAATTAATGAAAATAATAAAGTCATGATTGCACAAGGAGGAGCTATAGAACCACTTATTCATGTCTTGAAGACAGGAACATCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTCTCTCTGTATTGGAAGAATACAAGGCCAAAATCGGTCGGTCTGGTGCAGTTAAAGCCTTGGTCAATCTCTTAGGTGAGGGTACACTGAGGGGTAAGAAAGATGCAGCCACTGCTTTGTTCAACTTATCAATTTTTCATGAAAATAAGGCTCGTATAGTTCAAGCAGGAGCAGTTAAGTACCTTGTTGGGCTACTAGCCACTACTACAGGTATGGTTGATAAGGCTGCTGCACTTCTTGCTAATTTGTCGACAATTTCGGAGGGACGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTATGAGAGGAAAGGAAAATGCTGCATCTATTCTGTTGCAACTATGCCTTCATAGTCCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCCGTTCCACCTCTCGTCGCCCTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAACAGCTACTCAGCCATTTTCGGAATCAAAGAGATGGAAGCACAGGGAAAGCAAAATCATAG 2274 41.07 MGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVVSLKLSSDELLYRECESLDIAVNDAREFIENWCPKMSKICSALKCDPLLIKIQSSLQEICEIVWKLSESASCSSSLNAVQKCLEGLQSLKQERISESIEEALISQRSGIGPNSEDLLKIIEVLHLMSNQELLKETIAVEKERIDAEQNNAKEQLYRINEIMDLIIRIRDWMIRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYTVKAMILSWCDENKLNISSLSSLVQLSQQDSNRSDSSRSSPEVEKGSNKQNGDVFTNLIGGKSNEGQRNETEKFDHPSPQQSYIYSRSVSASSALSSIDYVPSALNEVLKISTKHEITSEHPTASHNEASGLNSSLEGGQLQACKTETGMVENGNCNSTTCNLVPVEPESDNSSGDLHIKKLVADLQSQKDEVKMKAAEELRLLAKDNVENRVIIGQCGAIGPLLSLLYSDGKQIQEHAVTALLNLSINENNKVMIAQGGAIEPLIHVLKTGTSTAKENSAATLFSLSVLEEYKAKIGRSGAVKALVNLLGEGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVGLLATTTGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSMRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSTGKAKS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6964531 6970187 + Cp4.1LG17g05960.1 Cpe17g00897 484215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00897 757 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 6 752 - -
Cpe17g00897 757 Coils Coil 179 200 - -
Cpe17g00897 757 MobiDBLite consensus disorder prediction 736 757 - -
Cpe17g00897 757 SUPERFAMILY RING/U-box 234 308 - -
Cpe17g00897 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515
Cpe17g00897 757 MobiDBLite consensus disorder prediction 321 374 - -
Cpe17g00897 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 554 IPR000225 GO:0005515
Cpe17g00897 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Cpe17g00897 757 Gene3D - 462 607 IPR011989 -
Cpe17g00897 757 PANTHER U BOX DOMAIN-CONTAINING 6 752 - -
Cpe17g00897 757 MobiDBLite consensus disorder prediction 336 358 - -
Cpe17g00897 757 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Cpe17g00897 757 Pfam Armadillo/beta-catenin-like repeat 501 540 IPR000225 GO:0005515
Cpe17g00897 757 Pfam Armadillo/beta-catenin-like repeat 585 622 IPR000225 GO:0005515
Cpe17g00897 757 SUPERFAMILY ARM repeat 472 744 IPR016024 -
Cpe17g00897 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 676 IPR000225 GO:0005515
Cpe17g00897 757 SMART arm_5 624 663 IPR000225 GO:0005515
Cpe17g00897 757 SMART arm_5 583 623 IPR000225 GO:0005515
Cpe17g00897 757 SMART arm_5 542 582 IPR000225 GO:0005515
Cpe17g00897 757 SMART arm_5 501 541 IPR000225 GO:0005515
Cpe17g00897 757 SMART arm_5 664 704 IPR000225 GO:0005515
Cpe17g00897 757 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Cpe17g00897 757 CDD RING-Ubox_PUB 240 282 IPR045210 -
Cpe17g00897 757 Gene3D - 608 755 IPR011989 -
Cpe17g00897 757 Pfam U-box domain 236 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01217 Cpe-Chr1:7263712 Cpe17g00897 Cpe-Chr17:6964531 7.17E-13 dispersed
Cpe05g01172 Cpe-Chr5:8001943 Cpe17g00897 Cpe-Chr17:6964531 1.02E-62 dispersed
Cpe16g00136 Cpe-Chr16:3117721 Cpe17g00897 Cpe-Chr17:6964531 1.15E-62 dispersed
Cpe16g00375 Cpe-Chr16:5401129 Cpe17g00897 Cpe-Chr17:6964531 2.32E-35 dispersed
Cpe17g00897 Cpe-Chr17:6964531 Cpe19g00648 Cpe-Chr19:5228574 8.72E-106 dispersed
Cpe12g01147 Cpe-Chr12:9426757 Cpe17g00897 Cpe-Chr17:6964531 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00897 - - csv:101219353 1200.65