Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00907 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTTCGAAGAGGAGGGAAAATAGTGCTGGAGGGAATGAGGAATCTACTGAACCGGTGGATGAAGAAGAGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAAGGAGGAATCTGCAGGAGAGAAGGGAAAGACGCAATATATTGGAAAAGAAGCTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAATTTTTGGAGAAGAAGGAAACAGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTTGATTTACTAACAATCATTGGCAAAGGTGCTTTTGGGGAGGTTCGTATTTGTAGAGAGAAGACAACAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCCGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTTCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTCTACCTTATTATGGAGTACCTACCTGGGGGAGATATGATGACTTTATTGATGAGAAAGGATACATTGACTGATGATGAAGCCAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAGTCTATTCATAGGCACAACTACATTCATAGAGATATCAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTCCAAGAACAAGATTTCAACATAGGGAGTGCCCGCAATGGAACTGCACAAAGTGATGAGAGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTACATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCAATTATGTATGAAATGCTTGTTGGGTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCTCTCTTGGCAAAAGATCTCATAAGCAAACTACTATGCAATGTTGACCAGCGGCTAGGTACAAACGGTGCGGATGAAATTAAGGTTCATCCGTGGTTTCAAAATCTTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATCGTCAACGATTATCAATTGCCTGGGATGACTGAATTGAAGAAAAAATGCAACAAACCAAAAAGACCCTCAATCAAGTCACTCTTTGACGAGGAATCAGAGGCACGAGATGCAGCTGATTCATCCATACGTTGTCAACCGAGCGTGGGGGGTAGCTGTTCAAACTCAATGACATCTGAACTGGATGCATTTGAAAAGAGAAAAGAGTCAATGTGA 1626 41.51 MDSARSWFNKLQPRDRLRGSSKRRENSAGGNEESTEPVDEEELSNITKQKVAAAKQYIENHYKEQRRNLQERRERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRICREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAIESIHRHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFNIGSARNGTAQSDESNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVDQRLGTNGADEIKVHPWFQNLEWDRLYEMEAAFVPEVKDELDTQNFEKFEEMLSSKDINFVGYTYKNFEIVNDYQLPGMTELKKKCNKPKRPSIKSLFDEESEARDAADSSIRCQPSVGGSCSNSMTSELDAFEKRKESM 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7020142 7026721 + Cp4.1LG17g05990.1 Cpe17g00907 484225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00907 541 Gene3D Phosphorylase Kinase; domain 1 438 448 - -
Cpe17g00907 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 507 - -
Cpe17g00907 541 Gene3D Phosphorylase Kinase; domain 1 91 203 - -
Cpe17g00907 541 Coils Coil 62 82 - -
Cpe17g00907 541 MobiDBLite consensus disorder prediction 507 541 - -
Cpe17g00907 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cpe17g00907 541 MobiDBLite consensus disorder prediction 515 530 - -
Cpe17g00907 541 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 507 - -
Cpe17g00907 541 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cpe17g00907 541 SMART serkin_6 120 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00907 541 MobiDBLite consensus disorder prediction 1 46 - -
Cpe17g00907 541 Pfam Protein kinase C terminal domain 438 466 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cpe17g00907 541 MobiDBLite consensus disorder prediction 9 30 - -
Cpe17g00907 541 SUPERFAMILY Protein kinase-like (PK-like) 93 460 IPR011009 -
Cpe17g00907 541 ProSiteProfiles Protein kinase domain profile. 120 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00907 541 SMART pkinase_C_6 420 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe17g00907 541 Gene3D Transferase(Phosphotransferase) domain 1 318 437 - -
Cpe17g00907 541 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00907 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe17g00907 541 CDD STKc_NDR_like 118 467 - -
Cpe17g00907 541 Gene3D Transferase(Phosphotransferase) domain 1 204 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00136 Cpe-Chr12:864627 Cpe17g00907 Cpe-Chr17:7020142 0 dispersed
Cpe17g00198 Cpe-Chr17:1277546 Cpe17g00907 Cpe-Chr17:7020142 0 dispersed
Cpe17g00907 Cpe-Chr17:7020142 Cpe18g00342 Cpe-Chr18:4868147 2.33E-159 dispersed
Cpe12g01138 Cpe-Chr12:9355714 Cpe17g00907 Cpe-Chr17:7020142 1.17E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62958 PF00069 Pkinase 2.40E-62 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00907 K08790 - csv:101221720 956.822