Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00919 ATGGATTTTCTCACAAAATCAAAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAATCCCGACTGTTGCATGCGATTTCTTCACAAATTCCCACTCTCAAAACCACCACCACTGCCTTCAACACCCTCCAAATCACTCCCAAAATCAGCACCCTCCAAATCACTCCCAAAATCAGCACCCTCCAAATCACTCCCAAAATCAGCACCCTCCCATGGACCTGTCCCTCAGAATTGACTCCAACAACAATGGGTTTGCGGTTGAGAGAGAGCACATGTTCGACAAAGTGGTCACTCCAAGCGATGTCGGAAAATTAAACCGTCTTGTCATCCCAAAGCAACACGCCGAAAAATACTTCCCTCTCAACTCAACAACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGCAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACAAAAGGCTGGAGCCGTTTTGTCAAAGACAAGAAATTGGATGCAGGCGACGTGGTTTCCTTCCAGCGTGGAGTTGGCGATTTCGCCAAGGACCGCCTTTTCATTGACTGGCGCCACCGTTCCGACACATCTCGCCCTCACCCACTCCTCCTCCTCCCACAGTCTCTTCGGTGGGCATCTGACCGCCACTTTACTACTCTCCCACCTCCGCCGCCACTGCAGCCCAGACGAACCCACCACCATCTCTATCCCAATTACGCCTTACAAATGTCAAATTTGGGGATGGGCAGTCACGGTAGTAATAATAATTCTTCCATGTATTATTTTCAACCCTCTATTTCCTCTTCTACTTCCTCCTCTCTCTATAGGATGCGGAATGGGGATGGGATTGTGGTAAATAATGAAGGCTCTTCCATGGGGATTAACAAAGGCGGCTCCGGCGGCACGACCCCCAAACGACTCCGCCTGTTTGGAGTGAATATGGAGTGTGCTGCAGCTGATGGAGAAGGAGAACATGATGTTCCAAACGGCGGCGTTTCGAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATGAGTGA 1083 50.23 MDFLTKSKQEEEEEEEEEEEEEEEEEEEEIPTVACDFFTNSHSQNHHHCLQHPPNHSQNQHPPNHSQNQHPPNHSQNQHPPMDLSLRIDSNNNGFAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLNSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDFAKDRLFIDWRHRSDTSRPHPLLLLPQSLRWASDRHFTTLPPPPPLQPRRTHHHLYPNYALQMSNLGMGSHGSNNNSSMYYFQPSISSSTSSSLYRMRNGDGIVVNNEGSSMGINKGGSGGTTPKRLRLFGVNMECAAADGEGEHDVPNGGVSRRGKEPLSLNWDE 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7125622 7126704 - Cp4.1LG17g09140.1 Cpe17g00919 484237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00919 360 SUPERFAMILY DNA-binding pseudobarrel domain 100 191 IPR015300 -
Cpe17g00919 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 334 IPR044800 GO:0003700
Cpe17g00919 360 MobiDBLite consensus disorder prediction 9 31 - -
Cpe17g00919 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 20 334 - -
Cpe17g00919 360 MobiDBLite consensus disorder prediction 334 360 - -
Cpe17g00919 360 CDD B3_DNA 101 190 IPR003340 GO:0003677
Cpe17g00919 360 Coils Coil 1 30 - -
Cpe17g00919 360 MobiDBLite consensus disorder prediction 1 31 - -
Cpe17g00919 360 Gene3D - 96 215 IPR015300 -
Cpe17g00919 360 SMART B3_2 103 208 IPR003340 GO:0003677
Cpe17g00919 360 ProSiteProfiles B3 DNA-binding domain profile. 103 208 IPR003340 GO:0003677
Cpe17g00919 360 MobiDBLite consensus disorder prediction 43 89 - -
Cpe17g00919 360 Pfam B3 DNA binding domain 103 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00288 Cpe-Chr3:1474757 Cpe17g00919 Cpe-Chr17:7125622 3.48E-47 dispersed
Cpe12g00470 Cpe-Chr12:4456795 Cpe17g00919 Cpe-Chr17:7125622 1.65E-129 dispersed
Cpe13g00343 Cpe-Chr13:3208495 Cpe17g00919 Cpe-Chr17:7125622 3.86E-42 dispersed
Cpe17g00919 Cpe-Chr17:7125622 Cpe14g00507 Cpe-Chr14:3214566 3.23E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50837 PF02362 B3 1.60E-28 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00919 - - cmos:111436350 375.555