Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g00919 | ATGGATTTTCTCACAAAATCAAAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAATCCCGACTGTTGCATGCGATTTCTTCACAAATTCCCACTCTCAAAACCACCACCACTGCCTTCAACACCCTCCAAATCACTCCCAAAATCAGCACCCTCCAAATCACTCCCAAAATCAGCACCCTCCAAATCACTCCCAAAATCAGCACCCTCCCATGGACCTGTCCCTCAGAATTGACTCCAACAACAATGGGTTTGCGGTTGAGAGAGAGCACATGTTCGACAAAGTGGTCACTCCAAGCGATGTCGGAAAATTAAACCGTCTTGTCATCCCAAAGCAACACGCCGAAAAATACTTCCCTCTCAACTCAACAACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGCAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACAAAAGGCTGGAGCCGTTTTGTCAAAGACAAGAAATTGGATGCAGGCGACGTGGTTTCCTTCCAGCGTGGAGTTGGCGATTTCGCCAAGGACCGCCTTTTCATTGACTGGCGCCACCGTTCCGACACATCTCGCCCTCACCCACTCCTCCTCCTCCCACAGTCTCTTCGGTGGGCATCTGACCGCCACTTTACTACTCTCCCACCTCCGCCGCCACTGCAGCCCAGACGAACCCACCACCATCTCTATCCCAATTACGCCTTACAAATGTCAAATTTGGGGATGGGCAGTCACGGTAGTAATAATAATTCTTCCATGTATTATTTTCAACCCTCTATTTCCTCTTCTACTTCCTCCTCTCTCTATAGGATGCGGAATGGGGATGGGATTGTGGTAAATAATGAAGGCTCTTCCATGGGGATTAACAAAGGCGGCTCCGGCGGCACGACCCCCAAACGACTCCGCCTGTTTGGAGTGAATATGGAGTGTGCTGCAGCTGATGGAGAAGGAGAACATGATGTTCCAAACGGCGGCGTTTCGAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATGAGTGA | 1083 | 50.23 | MDFLTKSKQEEEEEEEEEEEEEEEEEEEEIPTVACDFFTNSHSQNHHHCLQHPPNHSQNQHPPNHSQNQHPPNHSQNQHPPMDLSLRIDSNNNGFAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLNSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDFAKDRLFIDWRHRSDTSRPHPLLLLPQSLRWASDRHFTTLPPPPPLQPRRTHHHLYPNYALQMSNLGMGSHGSNNNSSMYYFQPSISSSTSSSLYRMRNGDGIVVNNEGSSMGINKGGSGGTTPKRLRLFGVNMECAAADGEGEHDVPNGGVSRRGKEPLSLNWDE | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7125622 | 7126704 | - | Cp4.1LG17g09140.1 | Cpe17g00919 | 484237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g00919 | 360 | SUPERFAMILY | DNA-binding pseudobarrel domain | 100 | 191 | IPR015300 | - | |
Cpe17g00919 | 360 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 20 | 334 | IPR044800 | GO:0003700 | |
Cpe17g00919 | 360 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Cpe17g00919 | 360 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 20 | 334 | - | - | |
Cpe17g00919 | 360 | MobiDBLite | consensus disorder prediction | 334 | 360 | - | - | |
Cpe17g00919 | 360 | CDD | B3_DNA | 101 | 190 | IPR003340 | GO:0003677 | |
Cpe17g00919 | 360 | Coils | Coil | 1 | 30 | - | - | |
Cpe17g00919 | 360 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cpe17g00919 | 360 | Gene3D | - | 96 | 215 | IPR015300 | - | |
Cpe17g00919 | 360 | SMART | B3_2 | 103 | 208 | IPR003340 | GO:0003677 | |
Cpe17g00919 | 360 | ProSiteProfiles | B3 DNA-binding domain profile. | 103 | 208 | IPR003340 | GO:0003677 | |
Cpe17g00919 | 360 | MobiDBLite | consensus disorder prediction | 43 | 89 | - | - | |
Cpe17g00919 | 360 | Pfam | B3 DNA binding domain | 103 | 207 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00288 | Cpe-Chr3:1474757 | Cpe17g00919 | Cpe-Chr17:7125622 | 3.48E-47 | dispersed | |
Cpe12g00470 | Cpe-Chr12:4456795 | Cpe17g00919 | Cpe-Chr17:7125622 | 1.65E-129 | dispersed | |
Cpe13g00343 | Cpe-Chr13:3208495 | Cpe17g00919 | Cpe-Chr17:7125622 | 3.86E-42 | dispersed | |
Cpe17g00919 | Cpe-Chr17:7125622 | Cpe14g00507 | Cpe-Chr14:3214566 | 3.23E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50837 | PF02362 | B3 | 1.60E-28 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g00919 | - | - | cmos:111436350 | 375.555 |