Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00925 ATGGCCGACGGCAACTTCGGTCTCCCTGACGATCTTCTCTCCTCCCGACCCTCCGATCACTCCTGGACGCCCAAAGGTACTCACAACACTCTCCGGAATGATGAGGAGAAGGTGCTCACGGCCTTCCTTGATGAGTCAAAAGACCCAGTGGCATCAGAGAACAACATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAGCTAAGATGATAAGTATTCTGTTCAACGTGGAACAGGAAGTGCGTGCTCCAACGCCAGTGTCCCTTGCTAACTCTACTGATCTCAATCAGAAAGATGTTTGGCGCCCAGATGGATCTGAGGACAAGAAGGATTGGAGGAAAAATACTTCTGAAAATGAAAGTGGGCGCTGTTGGCGAGAGGAAGAGCGTGAAACTGGCTTACTTGGTGGTCGCCGCAGAAAAGCTGAGCGCCGCATTGATAGCATGTCAACCAAGGAGACAATGGAGATTAGAGTCCTACCTAATTTGGACAGATGGCATGATGGTCGTACTTCTGGGCATGATAATCGCACTTCTGGTCATGATGGTCGTACTTCTGGGCATGATAGTCGTACTTCTGGTCATGATGCGCGACGTGACAACAAATGGACATTGAGGTGGGGACCAGATGACAAAGAAAAGGAATCACGGATGGACAAGCGAGCAGATGCTGATAAGGAAGATGTTCGCAATGACAGTCAATCAGTGAGTGGCAATCGCCCTACTTCTGAGCGTGATTCCGATTCACGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGTCATTCTGTTGGCTCAACTTCCTCTCGTGCTGCACCCGGTTTTACTCTTGAGAGAGGCCGGGGAGATGGGGGGTCTAATTTAGGATTTACAGTTGGACGAGGAAGGTCCAATACTATTGGGAGATCATCTACTTGTCCCATTGGAGTTCCGTCCTTGGATAAGATAGAAAATGTTCCTGGGAAACCAAGATACTCATCTTATTCTTTTTGTTACCCTAGGGGTAAGCTTCTTGACATATATAGGAGGCAGAAATTTGATCCATCGTTCTCATCTCTGCCTGATCACATGGATGAATTACTGCCTGTGACTCAACCTAGTTCTGTAGAACCGTTAGCGTTTGTTTCTCCGAATGCTGAGGAGGAGGCTATCCTTAGTGACATATGGAAGGGAAAGATCACAAGTAGTGGGGTTGTATACATTCCACAGAAAAAGGAGAAGCCAACTGAATGTATTTTAGGAGATGTTGACTCGATAGAGAGAAACCAGACTGGACTGGACTCCACTTTAGTATCTGAGGATGTAGAAGCAACTGCAGATGAAGAAATTGCTAATATCACTAAAAAAGTTACTAATGATGATGCATGCCAAGATACTAGTGACGGGAGCATTTGGAGTCATCCTGCAACGAGAGATGCCCTAAATGGAAAATATATCAGTCATAAGGAAGAGGAAAAAAGGTCCACTGCAGCTGTTTCCATGTCAAACGCTGATGGATTGGCCCATACAGTTTCTACAGTAGCCTCCCAACTTGGGATGGAGATTGGTACTCAGCTAAATGTTAATGTGAATGGGCGAGAAGATTCGGATCATAGAATGCCTCGTAACTTCAATGAAATTGAGTTTGCAAATTCTTTTGATGTCGGATCCAAGCTTCCTGATGATCCTAGTGCTATTTTCTTTATTCCCTTCTCTGAGCAAAATGCAACTATAAGTTCTGATGTGAAGTCCGAGGAGTTGAGTTTGTTTTATCTTGATCCTCAAGGGGTTATTCAGGGTCCATTTATCGGGGCTGACATTATTTTGTGGTATGAGCAAGGTTTCTTTGGGTTGGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAAGGAACCCCATTCAGTGAGTTGGGAAAGGTTATGCCACATTTGAAAATTAGAGTGGGAAGTGTTGATTGTGCTGATATGAAATCTCTTTCAGGACAATCTGGTGTCTCAGGAGGAATAATGGAGGCCAATTTGCCTTCTAAGCATCCTTCTCTTGATAAGAATGATGCGTCCACAACAAATGAGGTTCATCGGTCATTGGCTGAATTACATAGCCTCTCAAATCAACACATTCCATCTGGTATGTCCGAGACGGAAGTACCATTTCATTTACATTCCAAGGGTCAAGGCGTTCATGATGTTGTTGCACAGGATGAAGAAATTGTATTTTCTGGGAGGCCTGGAAATGGTGGTTATCAAATTCCTAACTCTGCTGGGGTACTGCCTTTGGTAAGTTCTATCAGCCAACCTTCCGAGTTGACTGATCGCAGTGTTCCCGTTCAGAATGAACATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACGAATGTGAAACCAGTTGAAGTCACAAATTTGAAACATGCCAAGTCAGCTAACATTCCTTCAAGCATGGGAAGAACTGGACCATTTGTTGGGAAGGGGGAAGCATCTCTCAATGCAGAGACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGGGTGTATACCAGGATGCAAATGCGATACTGGAGCAACGTCTTCTACATGAGCTACAGCAACAGTCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAACTTATTAAAACAAAGTTTGGTCACTTGCCACCACAACAGGAACATCCAAGAGATTTGTCTGAACTAATATCTCGGGCCCAGCTTGGACAGATGCAATCATTGGATCAGCAAATTCTCCAGCAGGAGATGCTTCAGTCTCGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAATATGGAGGACAAGAGACTTGTTGGTGGTCCCATCTGGCCAGAGGATGAGGCTGATCAGCAGTTTTTTAGAGGACATGCTAACGCACAACGTTTATTATCGTCAGGGTTTGAATTACACCAGCAGCAGCAGCAGCAGCAGAGGCAGTCTCATGTAGAGCAGCTGAATCACCTTGAGCGCAATCTTTCATTCCAAGATCGGTTTAGGCTAGGTCTTTATGAGCCTGCTTCACTTCCACTTGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCAATGGCCCGTGCTCGTGCTTTAGAATTGCAAGAATCTAGTGCACATAATCATCCACCTGGTGGTCAACTGGGACAATATGCACCCAGCATCATTCCACAGAATCCTCACCACTCTCTAGGCAGTAACCAGTTTCATGCTTCACATTTTGATGGAACTGAAGGCAACTGGTCTGAGAAAAATGACCGACATGGAAATGATTGGATGGAGTCTCGCATTCAACAGCTGCATATCAATGCTGAGCAACAGAAAAGGGAGTTGGAAGCTAAAATGATTTCTAAAGATCCAACTCTATGGATGTCAGATGGGCTCAATGATGAGAAGTCAAAGCAGTTATTAATGGAACTCCTCAATCAGAAGTCTGTTCATCAACCTACAGAATCCTTGGATGTAGGAAATTGTGCATCGTTCAATAGGGCATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGATCAGTCGTTCATTCTTCATTCAGGCAAGGAAAGAGGCTTGAACAATGCATTGTCAGTGGGGTCTTATGGTTCTAATTCTTATAAACCACTGCAAGGTGAGCATCCTGGCAGCTTGGCAAGCAATGAGAAGGTCCTGTACAGGTTGGAGTCTGGCTCTGTTAGCAAGGGAACATCAATTAACAGCTCTAGTTCGATGAATAAAGATGTCTCAGAGGTGGAGGGTAGAGCTCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCTTTCCAAATTCAAGAAAGCATGCTTGATCAAGTGGCATCTGCTGATCACGGGGAATTTTCGGTGGATACTCATACCCTTAGCCGGCATTCTTCTCTTGGTTCTGTTGGCTTTCACAATGAAAGGATTGCTAATACGTTCCCAGAAGAGATTTCTAAAGACCCGGATATTATCATTCACAATAAAGACAATACTTTATTGAAACGACCTCCTGTCTCACGTACTTCAGCAGCTCAGGAAGGATCGTCTGTCCTGATTTCTGATCCGGTTGTTAGAGGCAAGAATCCAGATGGAGGAAGACCCGACCCAACTGGTGTCTCGGTGAACCAAGAAAACATGGTTGCTGTGAAGAAAGAAATGCGTTTTCGGCGTTCTTCTTCCTGTAGTGACAATGAAGTATCGGAGACTTCTTTTATTGATATGCTGAAGAAGACAGCTCCGCAAGAAGTCCATTCAACTGGGGTTTCAGAACCATCAGATGGAATGCAGGGAGGGAAAGGTGGGAAAAAGAAAGGGAAGAAGGGGAGGCAAATAGACCCTGCACTACTCGGTTTCAAAGTCACCAGCAACAGAATCATGATGGGTGAAATTCAACGCTTAGACGATTAG 4428 44.99 MADGNFGLPDDLLSSRPSDHSWTPKGTHNTLRNDEEKVLTAFLDESKDPVASENNIPLSPQWLYAKPSEAKMISILFNVEQEVRAPTPVSLANSTDLNQKDVWRPDGSEDKKDWRKNTSENESGRCWREEERETGLLGGRRRKAERRIDSMSTKETMEIRVLPNLDRWHDGRTSGHDNRTSGHDGRTSGHDSRTSGHDARRDNKWTLRWGPDDKEKESRMDKRADADKEDVRNDSQSVSGNRPTSERDSDSRDKWRPRHRMESHSVGSTSSRAAPGFTLERGRGDGGSNLGFTVGRGRSNTIGRSSTCPIGVPSLDKIENVPGKPRYSSYSFCYPRGKLLDIYRRQKFDPSFSSLPDHMDELLPVTQPSSVEPLAFVSPNAEEEAILSDIWKGKITSSGVVYIPQKKEKPTECILGDVDSIERNQTGLDSTLVSEDVEATADEEIANITKKVTNDDACQDTSDGSIWSHPATRDALNGKYISHKEEEKRSTAAVSMSNADGLAHTVSTVASQLGMEIGTQLNVNVNGREDSDHRMPRNFNEIEFANSFDVGSKLPDDPSAIFFIPFSEQNATISSDVKSEELSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPEGTPFSELGKVMPHLKIRVGSVDCADMKSLSGQSGVSGGIMEANLPSKHPSLDKNDASTTNEVHRSLAELHSLSNQHIPSGMSETEVPFHLHSKGQGVHDVVAQDEEIVFSGRPGNGGYQIPNSAGVLPLVSSISQPSELTDRSVPVQNEHKLHPFGLLWSELEGTNVKPVEVTNLKHAKSANIPSSMGRTGPFVGKGEASLNAETWLDVYRRSMHSDQGVYQDANAILEQRLLHELQQQSHHQQRSVDPSFEQLIKTKFGHLPPQQEHPRDLSELISRAQLGQMQSLDQQILQQEMLQSRQLSMALRQRANMEDKRLVGGPIWPEDEADQQFFRGHANAQRLLSSGFELHQQQQQQQRQSHVEQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNHPPGGQLGQYAPSIIPQNPHHSLGSNQFHASHFDGTEGNWSEKNDRHGNDWMESRIQQLHINAEQQKRELEAKMISKDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDVGNCASFNRASSGLYSGSGSLDQSFILHSGKERGLNNALSVGSYGSNSYKPLQGEHPGSLASNEKVLYRLESGSVSKGTSINSSSSMNKDVSEVEGRARGLKGEGLMKTQAFQIQESMLDQVASADHGEFSVDTHTLSRHSSLGSVGFHNERIANTFPEEISKDPDIIIHNKDNTLLKRPPVSRTSAAQEGSSVLISDPVVRGKNPDGGRPDPTGVSVNQENMVAVKKEMRFRRSSSCSDNEVSETSFIDMLKKTAPQEVHSTGVSEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7147450 7156183 - Cp4.1LG17g09320.1 Cpe17g00925 484243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00925 1475 PANTHER GYF DOMAIN-CONTAINING PROTEIN 850 1475 - -
Cpe17g00925 1475 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 850 - -
Cpe17g00925 1475 SMART gyf_5 582 637 IPR003169 GO:0005515
Cpe17g00925 1475 PANTHER GYF DOMAIN-CONTAINING PROTEIN 850 1475 - -
Cpe17g00925 1475 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 850 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 102 235 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1045 1098 - -
Cpe17g00925 1475 Coils Coil 975 995 - -
Cpe17g00925 1475 Gene3D - 569 652 IPR035445 -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 245 265 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1061 1084 - -
Cpe17g00925 1475 SUPERFAMILY GYF domain 578 637 IPR035445 -
Cpe17g00925 1475 Coils Coil 1099 1123 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1421 1452 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1342 1356 - -
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 90 298 - -
Cpe17g00925 1475 CDD GYF 581 639 IPR003169 GO:0005515
Cpe17g00925 1475 ProSiteProfiles GYF domain profile. 581 632 IPR003169 GO:0005515
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1 34 - -
Cpe17g00925 1475 Pfam GYF domain 585 629 IPR003169 GO:0005515
Cpe17g00925 1475 MobiDBLite consensus disorder prediction 1342 1380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00925 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - csv:101204211 1323.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00430 Cpe-Chr7:2763378 Cpe17g00925 Cpe-Chr17:7147450 1.82E-20 dispersed
Cpe11g00193 Cpe-Chr11:1042038 Cpe17g00925 Cpe-Chr17:7147450 7.67E-45 dispersed
Cpe17g00925 Cpe-Chr17:7147450 Cpe17g00926 Cpe-Chr17:7157828 1.19E-16 tandem
Cpe01g00984 Cpe-Chr1:5836218 Cpe17g00925 Cpe-Chr17:7147450 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00925 Cpe_Chr17 FPKM 27.589628 32.602341 11.269681 10.795924 7.780572 7.003268 7.777281 4.884424 4.444176 5.576512