Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00928 ATGATGCATTACCAGGCAGAGCGTTCATGGGAATACTACATGCCGCCCACTGCAGCCAGAGACCCAGTGGACCGTGTACTCCGGCTTGCGGCAGAGAGCGCGGTGGTGATATTCAGCGTCAGCAGCTGCTGCATGTGCCACGCCCTCAAGCGCCTGCTATGCGGTATGGGAGTGAGCCCAACCGTGTACGAGCTCGACCACGACCCCAGAGGAAAAGAAATTGAGAGGGCTTTGATGAGGCTCGTCGGACCCACCGCACCGCCGGTGCCGGTCGTATTTATTGGCGGAAAGCTGGTGGGCTCTATGGACAGAGTTATGGCTTCTCACATCAATGGAACTTTGGTCCCTCTTCTCAAGGAAGCCGGGGCCTTATGGCTTTAG 381 57.48 MMHYQAERSWEYYMPPTAARDPVDRVLRLAAESAVVIFSVSSCCMCHALKRLLCGMGVSPTVYELDHDPRGKEIERALMRLVGPTAPPVPVVFIGGKLVGSMDRVMASHINGTLVPLLKEAGALWL 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7164865 7165245 - Cp4.1LG17g09310.1 Cpe17g00928 484246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00928 126 Pfam Glutaredoxin 35 99 IPR002109 -
Cpe17g00928 126 CDD GRX_GRXh_1_2_like 34 117 - -
Cpe17g00928 126 Gene3D Glutaredoxin 19 125 - -
Cpe17g00928 126 ProSiteProfiles Glutaredoxin domain profile. 23 125 - -
Cpe17g00928 126 PANTHER GLUTAREDOXIN-C5 5 125 - -
Cpe17g00928 126 PANTHER GLUTAREDOXIN 5 125 IPR011905 -
Cpe17g00928 126 TIGRFAM GlrX-like_plant: glutaredoxin-like family 27 126 IPR011905 -
Cpe17g00928 126 SUPERFAMILY Thioredoxin-like 23 125 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00928 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101219638 244.202
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00470 Cpe-Chr4:5388161 Cpe17g00928 Cpe-Chr17:7164865 6.84E-63 dispersed
Cpe17g00006 Cpe-Chr17:49419 Cpe17g00928 Cpe-Chr17:7164865 6.96E-38 dispersed
Cpe17g00092 Cpe-Chr17:547549 Cpe17g00928 Cpe-Chr17:7164865 6.96E-38 dispersed
Cpe10g00075 Cpe-Chr10:542899 Cpe17g00928 Cpe-Chr17:7164865 6.46E-37 transposed
Cpe13g01133 Cpe-Chr13:9026018 Cpe17g00928 Cpe-Chr17:7164865 1.09E-64 transposed
Cpe15g00290 Cpe-Chr15:3317178 Cpe17g00928 Cpe-Chr17:7164865 1.15E-31 transposed
Cpe12g01201 Cpe-Chr12:9822762 Cpe17g00928 Cpe-Chr17:7164865 1.54E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1312 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00173 Cam06g0039 Cec06g0193 Cco06g0186 Clacu06g0188 Cmu06g0183 Cre06g0955 . . . . . . Chy11g01815 Cme11g02349 . . . . . . . . Sed09g0793 . . . . . . Cpe17g00928 . Bhi12g02414 Tan06g1469 Cmetu11g2431 . Hepe03g1151 . . . . . . . . . Lsi09g01751 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000804 3 3 3 4 3 3 0 3 3 3 3 3 5 3 3 4 3 4 5 3 3 3 3 2 3 2 3 5 3 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00928 Cpe_Chr17 FPKM 17.340479 16.591974 13.254081 15.216321 9.621036 9.657535 7.391542 15.451643 17.31159 18.818794