Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00933 ATGTGGGGAATCGTTCGGCAAAAAGCTGGCGCTGCAGCCTCCTCTATTTTGATTTCCGGGCAGTCTTTGCAGAGACTTCGCCCTGCTGCATCGGCATCCAGATACTATTCATCTGCAGCAAAAGAGATGACAGTGAGAGATGCTCTAAACTCTGCACTTGATGAAGAAATGTCCGCTGATCCTAAAGTATTTTTGATGGGTGAAGAGGTTGGAGAATATCAGGGTGCCTATAAGATAACCAAAGGGCTCTTGGAGAAGTATGGTCCAGAGAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTGCTGGTATTGGTGTTGGTGCTGCTTACCATGGTCTGAAGCCTGTTGTGGAGTTTATGACTTTTAATTTCTCCATGCAGTGTTATGCAGCATGGTATGGCTCCTGTCCTGGCTTGAAAGTTTTGGCCCCATATTCATCTGAAGATGCTCGTGGGCTTTTAAAGGCTGCCATAAGGGATCCAGATCCTGTGGTGTTTCTTGAAAATGAGTTATTATATGGTGAATCATTCCCTGTTTCTGCTGAGGTCCTCGATTCCAGTTTCACCGCTCCCATAGGAAAAGCTAAGATTGAGAGAGAAGGGAAGGATGTGACTATTACTGCCTTTTCGAAGATGGTGGGCTATGCACTTAAGGCAGCTGAAGAACTTTCCAAAGAAGGAATTAGTGCTGAGGTTATAAACCTGCGTTCTATTCGACCGCTAGACAGAGCCACAATTAATGCTTCAGTTAGGAAGACCAACAGATTAGTAACAGTTGAAGAAGGGTTCCCTCAGCACGGCGTTGGTGCTGAGATTTGTGCATCTGTTGTGGAGGACAGTTTTGGCTATCTTGATGCGCCAGTGGAGAGGATTTCAGGGGCTGACATTCCTATGCCTTATGCAGCCAATCTCGAAAGGATGGCTGTCCCTCAGATTGAGGACATTGTTCGAGCAGCAAAAAGAGCATGCTACAGAGCCGTACCTTTGGCCGCAACTGGTTGA 1005 46.77 MWGIVRQKAGAAASSILISGQSLQRLRPAASASRYYSSAAKEMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFAGIGVGAAYHGLKPVVEFMTFNFSMQCYAAWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFTAPIGKAKIEREGKDVTITAFSKMVGYALKAAEELSKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVVEDSFGYLDAPVERISGADIPMPYAANLERMAVPQIEDIVRAAKRACYRAVPLAATG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7189177 7195078 + Cp4.1LG17g09290.1 Cpe17g00933 484251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00933 334 Pfam Transketolase, pyrimidine binding domain 42 131 IPR005475 -
Cpe17g00933 334 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL 1 329 - -
Cpe17g00933 334 PANTHER DEHYDROGENASE RELATED 1 329 IPR027110 GO:0004739|GO:0006086
Cpe17g00933 334 SMART Transket_pyr_3 43 176 IPR005475 -
Cpe17g00933 334 Gene3D - 39 128 - -
Cpe17g00933 334 Pfam Transketolase, C-terminal domain 194 316 IPR033248 -
Cpe17g00933 334 CDD TPP_PYR_E1-PDHc-beta_like 47 171 - -
Cpe17g00933 334 SUPERFAMILY TK C-terminal domain-like 189 323 IPR009014 GO:0003824
Cpe17g00933 334 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 41 180 IPR029061 -
Cpe17g00933 334 Gene3D - 129 194 - -
Cpe17g00933 334 Gene3D - 195 325 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00933 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - csv:101220981 587.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00755 Cpe-Chr9:7029097 Cpe17g00933 Cpe-Chr17:7189177 8.13E-69 dispersed
Cpe17g00933 Cpe-Chr17:7189177 Cpe18g00274 Cpe-Chr18:4346872 1.09E-40 dispersed
Cpe12g01196 Cpe-Chr12:9789779 Cpe17g00933 Cpe-Chr17:7189177 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00933 Cpe_Chr17 FPKM 0.35431 0.0 0.70793 0.662872 0.388388 0.532975 0.748374 1.616594 1.360194 1.168585