Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00934 ATGAAGACTTCTTTGAGGAAGTTGACGGGTTTTGGACTGCACAAGCACGAACCTAAGGGCCGTGTAGATCCTCGTCCTTTGGCTCAATTGGATGAGCTTGCTCAGGCTGCTCGGGACATGGAAGAAATGAGGGACTGTTATGATAGCTTACTTTCTGCAGCTGCCGCTACCGAAAATAGTGCTTATGAATTCTCAGTGTCTTTACAAGAAATGGGTGCATGTCTTCTTGAGAAAACTGCACTGAATGATGATGAAGACAGTGGTAAGGTTCTGATAATGCTGGGAAAGGTGCAGTTTGAACTCCAGAAACTTGTAGATCGATATCGATCTCATATTTCACAAACTATAACACGCCCATCTGAGTCTCTTCTGAATCAACTTCGAACTGTTGAGGAGATGAAAAGACAATGCGACGAGAAAAGAGAAGTATATGAGTACATGAGACTGAGGCACAAGGAGAAGGGGAGGTCAAAAACCGTGAAAGGAGAGAGCTTTACATTGCAACAATTACAAACAGCTCGAGAAGAATATGATGATGAGGCAACACTATTTGTTTTCCGGTTGAAATCTTTGAAGCAAGGACAGTCTCATAGTCTTCTCACACAGGCTGCTCGTCACCATGCTACTCAGGTGGACCAGTCAGATCTTGCATTTCATCATGTGGAAGCTGTGAAGGAAAATCTTGACAGAAATCGTAGGAATTCCTTTTCTTTTGGTGGTAGAACAGTAAGCCAATCTGCCCCACTTTTTCCCGATAAAAAATTTGATGCTGCTGAAAGAATAAGACAGATGCGGCTTTCATCAACCCGGCAGTTCCACACATATGTTCTACCCACCCCAGCTGATACAAACGGTTCAATTTCTGGGGGTCCTGCAAATCCGGTATCTAACACCACACAGACAATAAGTCAGCAAAATTTATGGCGGCACTCATCACCATTGGAACCAAGGAAGTACAGCAAGTTAGTGGGAGATGAAAATATGTCAGGACATGCTGCTGCAAAGGCGCAGTCTGTACTGAAGGAGAGTAACACTAACGCATCATCCACTCAGTTACCTCCTCCTTTGTCTGATGGCTTGCTACAGCACAGTCTAGCTGCTGCTTCTGATGCTAAAAATTTTAAGAGACTAGCCTTTTCGGGCCCTTTAATGGGTAAGCCATCAACTAACAAGCCTGTTACAATAAAAAACCCCCAGTTGTTTTCAGGACCTCTCTTGCGAAATCCAATACCACAACCTTTGTCATCATCACCAAAAGTGTCCCCAGTTGCTTCCCCTACTTTTATTTCCTCACCTAAAATAAATGAGCTTCATGAGCTTCCTAGGCCTCCCATTAGTTCAACATATAAGTCGTCAAGACCTTCAAGTTTAGTTGGTCACTCTGCTCCTTTGGTATCCAAAAGCCAAGGACTCTCTACTGCAACTAAAACTGTTGTAAGGAGTACAGCATCTCCATTGCCAATGCCTCCTCTTCAAACTATCACACGCAGTTTCTCCATTCCGTCCCGGAGTCCTAGGGAGACAGAGACCTTATTTCACGAGCCAAAGCCTCTGGAAACCGTTCGATCTTCTGAAATGGCACCAGACTCATCTTCACCTCCCTTGACACCACTTACCTTTTCTAACAACCGGAGTCATACATCAACAGGTTCAGAGAATGGTCCTGCAAGTTAA 1674 44.27 MKTSLRKLTGFGLHKHEPKGRVDPRPLAQLDELAQAARDMEEMRDCYDSLLSAAAATENSAYEFSVSLQEMGACLLEKTALNDDEDSGKVLIMLGKVQFELQKLVDRYRSHISQTITRPSESLLNQLRTVEEMKRQCDEKREVYEYMRLRHKEKGRSKTVKGESFTLQQLQTAREEYDDEATLFVFRLKSLKQGQSHSLLTQAARHHATQVDQSDLAFHHVEAVKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERIRQMRLSSTRQFHTYVLPTPADTNGSISGGPANPVSNTTQTISQQNLWRHSSPLEPRKYSKLVGDENMSGHAAAKAQSVLKESNTNASSTQLPPPLSDGLLQHSLAAASDAKNFKRLAFSGPLMGKPSTNKPVTIKNPQLFSGPLLRNPIPQPLSSSPKVSPVASPTFISSPKINELHELPRPPISSTYKSSRPSSLVGHSAPLVSKSQGLSTATKTVVRSTASPLPMPPLQTITRSFSIPSRSPRETETLFHEPKPLETVRSSEMAPDSSSPPLTPLTFSNNRSHTSTGSENGPAS 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7196922 7204467 + Cp4.1LG17g09280.1 Cpe17g00934 484252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00934 557 MobiDBLite consensus disorder prediction 10 25 - -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 281 314 - -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 1 25 - -
Cpe17g00934 557 SUPERFAMILY BAR/IMD domain-like 31 210 IPR027267 -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 281 311 - -
Cpe17g00934 557 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 210 548 IPR037488 -
Cpe17g00934 557 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 211 IPR037488 -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 338 354 - -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 524 557 - -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 445 506 - -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 434 557 - -
Cpe17g00934 557 PANTHER BNAA05G10100D PROTEIN 210 548 - -
Cpe17g00934 557 PANTHER BNAA05G10100D PROTEIN 1 211 - -
Cpe17g00934 557 Gene3D Arfaptin homology (AH) domain/BAR domain 29 237 IPR027267 -
Cpe17g00934 557 MobiDBLite consensus disorder prediction 328 354 - -
Cpe17g00934 557 CDD BAR 39 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00934 - - - bhj:120092875 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01195 Cpe-Chr12:9781254 Cpe17g00934 Cpe-Chr17:7196922 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1323 Blo01g00161 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00167 Cam06g0045 Cec06g0187 Cco06g0180 Clacu06g0182 Cmu06g0177 Cre06g0950 . . . . . . Chy11g01821 Cme11g02355 . . . . . . . . . . . . . . . Cpe17g00934 . Bhi12g02403 Tan06g1458 . . . . . . . . . . . . Lsi09g01757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003357 3 3 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00934 Cpe_Chr17 FPKM 40.823059 43.245831 11.630922 9.459798 11.839945 10.915749 11.506669 7.899378 9.335752 9.57205