Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00935 ATGGCCAGTTTCAGAGATTTGGTTTTCTTTCTATCATTGGCTTCTTCCATTGCTGCAGTCCTCTGCAACTCAGAAGGGGATGCTCTTGCTGCATGGAAGGCTGAACTGGTTGATCCAAACAATGTCCTCCAAAGCTGGGACCCGTCTCTAGTAAATCCATGCACTTGGTTCCACATCACCTGCAACATCAATAACACGGTCACCCGAGTGGACCTTGGCAATGCTAGTCTCTCCGGACCCCTCGTTCCCCAACTCGCAAACTTGCCAAATCTTCAGTTCTTGATCATAAACGACAACAATTTGAGTGGGGTAATTCCAAAGGAGATAGGGATATTGAGCAATCTGAGGAGTTTGTTCCTGTCCAAAAACAAGTTCTCAGGGTCTTTACCACCTTCCTTGGGAAATTTGAGCTCATTGGTTTTCTTGTAA 429 45.92 MASFRDLVFFLSLASSIAAVLCNSEGDALAAWKAELVDPNNVLQSWDPSLVNPCTWFHITCNINNTVTRVDLGNASLSGPLVPQLANLPNLQFLIINDNNLSGVIPKEIGILSNLRSLFLSKNKFSGSLPPSLGNLSSLVFL 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7205562 7206345 - Cp4.1LG17g09350.1 Cpe17g00935 484253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00935 142 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 2-LIKE 12 142 - -
Cpe17g00935 142 SUPERFAMILY L domain-like 23 142 - -
Cpe17g00935 142 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 142 - -
Cpe17g00935 142 Gene3D Ribonuclease Inhibitor 21 142 IPR032675 -
Cpe17g00935 142 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00935 - - - cmax:111497719 273.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00935 Cpe-Chr17:7205562 Cpe14g00219 Cpe-Chr14:1241039 6.73E-49 dispersed
Cpe12g01194 Cpe-Chr12:9777219 Cpe17g00935 Cpe-Chr17:7205562 5.89E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1325 . . Bda01g02111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01822 Cme11g02357 . . . . . . . . Sed08g1027 . . . . . . Cpe17g00935 . Bhi12g02400 Tan06g1455 Cmetu11g0835 . Hepe03g1159 . . . . . . . . . Lsi09g01758 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00935 Cpe_Chr17 FPKM 0.950292 1.49194 1.822504 1.977232 5.460026 5.774809 5.483725 0.446241 0.362128 0.519836