Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00936 ATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAAGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAACAAAGCTTTGCGTTGCCTGCTTGA 363 48.21 MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7207483 7210305 - Cp4.1LG17g09340.1 Cpe17g00936 484254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00936 120 ProSiteProfiles LITAF domain profile. 19 99 IPR006629 -
Cpe17g00936 120 PANTHER LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR 8 112 IPR037519 -
Cpe17g00936 120 PANTHER BNAC09G43880D PROTEIN 8 112 - -
Cpe17g00936 120 MobiDBLite consensus disorder prediction 1 20 - -
Cpe17g00936 120 Pfam LITAF-like zinc ribbon domain 32 96 IPR006629 -
Cpe17g00936 120 SMART litaf 34 99 IPR006629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00936 K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor - csv:101221688 214.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01193 Cpe-Chr12:9771331 Cpe17g00936 Cpe-Chr17:7207483 5.31E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01823 Cme11g02358 . . . . . . . . Sed07g0128 . . . . . . Cpe17g00936 . Bhi12g02399 Tan06g1453 Cmetu11g2573 . . . . . . . . . . . Lsi09g01760 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009739 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00936 Cpe_Chr17 FPKM 1.505639 1.405526 21.501675 18.966055 183.700729 159.778824 177.837936 12.991826 13.941328 13.576232