Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00943 ATGGCTTTGCAGCAGCTTAGCCTTGGCCCAACTCCCGTTGACGCCGTCACGAATGGCCTTGACGCCCGCCCCATCTCATCTGACGGCGGAGACAACGGCAGCAAAACCCCCAGGCTCCCCCGTTGGACCCGCCAGGAGATTCTCGTCCTCATACAGGGAAAGAAGGTTGCTGAGACCAGGGTTCGCGGAGGCCGGGCTGCTACTCTCGCCTTTGGTTCCGCCCAGCTCGAGCCCAAGTGGGCCTCTGTCTCCTCCTACTGTAAGAGACATGGGGTTAATCGGGGTCCGGTTCAGTGCCGCAAGAGATGGAGCAATTTGGCTGGCGACTTCAAGAAGATCAAGGAGTGGGAGTCCCAAATTAGGGATGACTCTGAATCCTTTTGGCTCATGAGGAACGATTTGAGGCGCGAGAGGAAATTGCCAGGGTTTTTCGACAGAGAGGTTTATGATATCTTGGAATCCGGCTCGGCTCCTTCGCCGTCGCCGGCTCTGGCTCTCGCCCTCGCTCCTGCTCCTGCTCCTCCTCCGGTCCCCCCTCTCACGTCAGCCCTAAATTCCGACGACGCCGAGCCGGAGCACGTCTTCGATAGTTTTAAAACTGCGGCAGCGGACGACGGCTTGTTTTCCGATTTCGAGCAGGACGAAACCAGCCAGAGCCCCATCAAGGAGGTCCCGGGGAAGGAGGCTCCGGTCCCGACGCCCGACGGGGAAATCCCTGCTCCGGCACCTTTATCAGAGAAGCCGTACCAACCTGCTAGTCAAGGTTGTCCTGATCAAGGCACGTCAAATGAGAGAGAAGCAGCGGCAAATCCGGAGATAGGATCGAGTTTGCAAGAGGGACGGAAGCGGAAGCGCATTGCAAAAGAGGGGGAGGAGGAAAGTATGATGATGCAGGATGAGTTGATTGGCATCCTGGAAAAGAATGGGAAACTGCTGACTGCCCAACTTGAAGCTCAAAACATGAACTTCCAGCTGGACCGGGAGCAGCGAAGATACCACGCAGATGGGTTAGTGACGGTTCTGAACAAGCTCGCAGATGCTCTAGGCAGGATCGCGGACAAGCTGTAG 1068 57.12 MALQQLSLGPTPVDAVTNGLDARPISSDGGDNGSKTPRLPRWTRQEILVLIQGKKVAETRVRGGRAATLAFGSAQLEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIRDDSESFWLMRNDLRRERKLPGFFDREVYDILESGSAPSPSPALALALAPAPAPPPVPPLTSALNSDDAEPEHVFDSFKTAAADDGLFSDFEQDETSQSPIKEVPGKEAPVPTPDGEIPAPAPLSEKPYQPASQGCPDQGTSNEREAAANPEIGSSLQEGRKRKRIAKEGEEESMMMQDELIGILEKNGKLLTAQLEAQNMNFQLDREQRRYHADGLVTVLNKLADALGRIADKL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7242980 7245727 - Cp4.1LG17g09540.1 Cpe17g00943 484261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00943 355 Pfam Myb/SANT-like DNA-binding domain 41 130 IPR044822 -
Cpe17g00943 355 MobiDBLite consensus disorder prediction 212 290 - -
Cpe17g00943 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 23 355 - -
Cpe17g00943 355 Gene3D - 42 112 - -
Cpe17g00943 355 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 23 355 - -
Cpe17g00943 355 MobiDBLite consensus disorder prediction 232 246 - -
Cpe17g00943 355 MobiDBLite consensus disorder prediction 1 38 - -
Cpe17g00943 355 ProSiteProfiles Myb-like domain profile. 41 107 IPR001005 -
Cpe17g00943 355 MobiDBLite consensus disorder prediction 252 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00943 - - - cmax:111498209 635.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01668 Cpe-Chr1:10393396 Cpe17g00943 Cpe-Chr17:7242980 2.14E-14 dispersed
Cpe17g00943 Cpe-Chr17:7242980 Cpe05g00748 Cpe-Chr5:4588907 4.17E-08 dispersed
Cpe17g00943 Cpe-Chr17:7242980 Cpe12g01186 Cpe-Chr12:9729730 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1344 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00158 Cam06g0057 Cec06g0175 Cco06g0169 Clacu06g0169 Cmu06g0165 Cre06g0940 . . . . . . Chy11g01831 Cme11g02367 . Blo12g00294 . . . . . . Sed06g0273 . . . . . . Cpe17g00943 . Bhi12g02389 Tan06g1441 Cmetu10g1400 . Hepe03g1174 . . . . . . . . . Lsi09g01768 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005043 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50840 PF13837 Myb_DNA-bind_4 8.90E-11 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00943 Cpe_Chr17 FPKM 29.195072 27.914316 24.572285 23.961451 20.444962 19.120533 23.552372 18.784681 17.326372 18.429792