Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00944 ATGCCCTCTGAAGTATTGGACCTCAAGGCTTTATCTTCATCTTCCTTCTTCTCCCACGATTTACGTCATTCAGATGAGGGGCAGCTTGGAGTTTGGAAGTTAGCTAGTATGCCAAATCACCGTGGTGCTTCATCATCTGTGGAAAAACTTTCAATGGGTGATTGCCCGGCAGAGAACTCACTGGAAAATCACGATTCATTTCCTGTGAGAGACCAGAATGCAAGTCTTATCCTGAATAGACATGCTGTTGGAGCTGAAAGAACATCCAATTATTTTGCTCGGAATAATGAAGTCAATATGATGAATTCTCAGTATGAGAGTAGTCTTTTCTCGAGTTCTTTATCAGATATATTTACTAGGAAATTGCGATTTTCTCCCAGCAATGCACTATATGGCCATTCTGTTGATACTGTTGCATCTCACTTTGAGGAGGAGGAGGTTTTTGAGTCACTTGAAGAGTTGGAGGCCCAAACCATTGGGAACCTCCTCCCTGATGACGATGACTTACTTGCTGGGGTAGTAACTGATGGGCTTGATTGTTTGATTGAAACAACTGGCGAGGATGATGCTGAGGACTTGGATTTCTTTAGCAATGTTGGAGGGATGGATCTGGGTGATGATGGCTCATCTGTTGTTGGACAGAAAAATTCTGAATCTTCTGGAGGACTATTTAACAATTTGCTGGGGATGCATAACGGTGCTATGGCTGGAGAGCATCCTTTAGGCGAACATCCTTCCAGGACACTGTTTGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGCTCCTTTTTGAGCAATATGGAGACATTCGCACTCTTTATACAACATGCAAACATCGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAATGCAATGAAAGCACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCTATACCGAAGGACAATCCATCTGAAAAAGATATTAACCAAGGAACTCTTGTTGTTTTTAACCTTGAGTCTTCTGTTTCAAATGAAGAACTTCGTCAGATATTTGGTGTCTACGGAGAAATCAAGGAGATTCGTGAATCTCCCCACAGAAGTCATTATAAATTCATTGAATTTTATGATATCCGAGCTGCAGAGGCTGCTCTTTGTGCATTAAACCTGAGTGATATAGCAGGAAAGCAGATAAAGCTTGAGCCAAGTCATCCTGGTGCTGTGAGACGAAGTTTGGTGCAACAATTACATCCACAGTTGGAGCGGGAAGATATTGGTCTCTATTTGCAACAGGGTAGCCCTCCTGTTAGTTGTAGTGCCGGCTTCTCTGGATTAGTTCCTAGTGGGACTATCAAATCTAGCAGCATGAGTAATGGATCTGTTCTTGGTGTACACTCTATGATACGAGCTCCATCTCGGGAGACCGAGTTGCATCATGGAATATCCTCCAGTGTTCCTAGTAGCTTACCTTCTGTGATGAGATCTGAATCAATTGGCAAGCAATCTGGCTTTATTGACTCTGGTCATTCACCTTCACCACTAAAGCTGGGTATCCGGGCAGCTCCAGCTATTCATCCTCATTCGCTTCCAGAACATCATGATAGTTTGAACAACAATGTTCACTGCAATTCTCTGAATACGATTGCAGGAAACATCAGTCTACGACCACCCGAAAGAGCTGACAGCAGGCAGCTTGTAAACTTTAATGGCCGCTCTATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACTTGCCCCATTCCTGGACCACATTATACATGGGGTAACTCCTACCGGCCCCAGCCGCCAGCTCCTAGTGTTGTTTGGCCAAATTCTCCATCTTATATGAACGGAATTCCTGCTGCCCACACCCCAACCCAAGTCCATGGAGTTCCAAGAGCAGCATCTCATTTGATGCACACAGTTCTGCCCATGAATAATCACCACGTTGGATCAGCTCCAGCTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCGAAAGCCTCTGGGTTTCATTCAGGTTCTATAGGGAATATGAATCTGCCTAACAATTCACCACAGTCTATGGAATTTTTCTCTCATATCTTCCCACAAGTTGGTGGAAATTCTGTAGAGCTCCCTATCCCCCAAAGGAATGTAGGACTTCAATCCCATCATCAGCGGTGCATGGTTTTTCCTGGACGAGGCCAAATTCTCCCAATGATGAATTCATTTGACTCTTCCAATGAACGTGGTAGAAGCCGAAGAAATGAAGCAGCCGCTAATCAAGCAGATAAGAAGCAATATGAACTTGACATTGATCGCATATTGAGGGGTGAAGACAATCGTACTACGCTTATGATAAAGAACATTCCTAACAAATATACATCAAAGATGCTTTTAGCTGCAATTGATGAACGACATCGAGGAACTTATGACTTCATCTATCTGCCTATTGACTTTAAGGCAAGTTTTTCCATGTTCAGTGCCGCAAACAAATGTAACGTGGGATATGCGTTCATTAACATGACTGATCCTAGCCTAATTATTCCATTCTATGAGGCATTTAATGGGAAAAAATGGGAGAAATTCAATAGTGAGAAGGTGGCGTCACTTGCATATGCTCGCATACAGGGAAAAGCTGCCCTTATCGCTCATTTCCAGAATTCAAGTTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACTGATGGCCCCAATGCAGGCGATCAGGTTCCGTTTCCAATGGGGGTAAATGTTCGTACTAGGCCTGGAAAAGGCCGAACCAACACCCAGGACGAAAACCCTGATGAAGGTCTATTAATTTCTGGAAATGGTGAGAATTGTTCCAGTGGAGATGCATCTTCTTCATGTGTTGTAAAGGATTTGGAGCAGCTAGTACCATAA 2922 42.81 MPSEVLDLKALSSSSFFSHDLRHSDEGQLGVWKLASMPNHRGASSSVEKLSMGDCPAENSLENHDSFPVRDQNASLILNRHAVGAERTSNYFARNNEVNMMNSQYESSLFSSSLSDIFTRKLRFSPSNALYGHSVDTVASHFEEEEVFESLEELEAQTIGNLLPDDDDLLAGVVTDGLDCLIETTGEDDAEDLDFFSNVGGMDLGDDGSSVVGQKNSESSGGLFNNLLGMHNGAMAGEHPLGEHPSRTLFVRNINSNVEDSELKLLFEQYGDIRTLYTTCKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDINQGTLVVFNLESSVSNEELRQIFGVYGEIKEIRESPHRSHYKFIEFYDIRAAEAALCALNLSDIAGKQIKLEPSHPGAVRRSLVQQLHPQLEREDIGLYLQQGSPPVSCSAGFSGLVPSGTIKSSSMSNGSVLGVHSMIRAPSRETELHHGISSSVPSSLPSVMRSESIGKQSGFIDSGHSPSPLKLGIRAAPAIHPHSLPEHHDSLNNNVHCNSLNTIAGNISLRPPERADSRQLVNFNGRSIELNEDVFASGGNRTCPIPGPHYTWGNSYRPQPPAPSVVWPNSPSYMNGIPAAHTPTQVHGVPRAASHLMHTVLPMNNHHVGSAPAVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLPNNSPQSMEFFSHIFPQVGGNSVELPIPQRNVGLQSHHQRCMVFPGRGQILPMMNSFDSSNERGRSRRNEAAANQADKKQYELDIDRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKASFSMFSAANKCNVGYAFINMTDPSLIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRTRPGKGRTNTQDENPDEGLLISGNGENCSSGDASSSCVVKDLEQLVP 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7250975 7259758 + Cp4.1LG17g09420.1 Cpe17g00944 484262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00944 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 313 IPR000504 GO:0003723
Cpe17g00944 973 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 399 IPR000504 GO:0003723
Cpe17g00944 973 Gene3D - 331 421 IPR012677 -
Cpe17g00944 973 MobiDBLite consensus disorder prediction 939 961 - -
Cpe17g00944 973 Gene3D - 237 330 IPR012677 -
Cpe17g00944 973 CDD RRM1_MEI2_like 246 322 IPR034453 -
Cpe17g00944 973 SMART rrm1_1 248 316 IPR000504 GO:0003723
Cpe17g00944 973 SMART rrm1_1 333 401 IPR000504 GO:0003723
Cpe17g00944 973 MobiDBLite consensus disorder prediction 751 767 - -
Cpe17g00944 973 CDD RRM2_MEI2_like 331 401 - -
Cpe17g00944 973 Pfam RNA recognition motif 2 785 890 IPR007201 -
Cpe17g00944 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 320 IPR000504 GO:0003723
Cpe17g00944 973 PANTHER PROTEIN MEI2-LIKE 4 2 958 - -
Cpe17g00944 973 SUPERFAMILY RNA-binding domain, RBD 244 406 IPR035979 GO:0003676
Cpe17g00944 973 MobiDBLite consensus disorder prediction 744 767 - -
Cpe17g00944 973 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 958 - -
Cpe17g00944 973 SUPERFAMILY RNA-binding domain, RBD 787 881 IPR035979 GO:0003676
Cpe17g00944 973 CDD RRM3_MEI2_like 788 882 IPR034454 -
Cpe17g00944 973 MobiDBLite consensus disorder prediction 928 961 - -
Cpe17g00944 973 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 405 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00944 - - - mcha:111017453 1777.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01137 Cpe-Chr2:10369270 Cpe17g00944 Cpe-Chr17:7250975 4.01E-09 dispersed
Cpe07g00034 Cpe-Chr7:175288 Cpe17g00944 Cpe-Chr17:7250975 5.94E-22 dispersed
Cpe15g00874 Cpe-Chr15:8472124 Cpe17g00944 Cpe-Chr17:7250975 0 dispersed
Cpe17g00944 Cpe-Chr17:7250975 Cpe19g01112 Cpe-Chr19:7495767 0 dispersed
Cpe20g00901 Cpe-Chr20:7992940 Cpe17g00944 Cpe-Chr17:7250975 3.31E-08 dispersed
Cpe12g01185 Cpe-Chr12:9716091 Cpe17g00944 Cpe-Chr17:7250975 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00944 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0