Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00948 ATGGCTTTCAGACCCTCTCTCACCTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAACGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTACGTCTTCTAAGGGCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGTTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGGCGAAGCAGCAGCTACTGCATTCGCCGGTGGTCAATGTGAGCAAGAAGAAGAGGGAGAGCATCCCGGAGGTGGAGGAGCCCGACACCGTCATCAATTCCGCCGACAAGTTTATCAACAAATCCATTCTTAGGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAG 390 52.82 MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATSSKGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNVSKKKRESIPEVEEPDTVINSADKFINKSILRKVAHIQDNTKTV 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7272151 7276762 + Cp4.1LG17g09470.1 Cpe17g00948 484266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00948 129 MobiDBLite consensus disorder prediction 22 45 - -
Cpe17g00948 129 PANTHER OS09G0127700 PROTEIN 1 127 - -
Cpe17g00948 129 MobiDBLite consensus disorder prediction 22 47 - -
Cpe17g00948 129 PANTHER RIBOSOME BIOGENESIS NEP1-LIKE PROTEIN 1 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00948 - - - cmax:111497635 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00065 Cpe-Chr9:390667 Cpe17g00948 Cpe-Chr17:7272151 6.19E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1373 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00152 Cam06g0063 Cec06g0168 Cco06g0162 . Cmu06g0159 Cre06g0934 . . . . . . Chy11g01839 Cme11g02375 Blo02g00218 . . . . . . . Sed07g0982 . . . . . . Cpe17g00948 . Bhi12g02380 Tan06g1431 Cmetu06g0570 . . . . . . . . . . . Lsi09g01774 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002790 2 1 1 3 2 2 2 2 2 1 3 2 1 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00948 Cpe_Chr17 FPKM 19.142857 19.947115 14.104886 11.257603 19.977188 13.395677 19.572495 16.375113 18.250729 18.280565