Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00949 ATGGAGAAACACCCATCGCTGCAAGTCATGCTTGGTAGAGATGACAATATTGGGGATAAAGCTGACATGGTTGTTCAGGTCAAGGGCACTCTGGATCAACTCTTGGATTCCCCTGCCATCCTCAACATGGAAGCAGAGCAAAGCAGCGAACTTCTTTCCATCTACAAAATACCATTCTTCATGACACAAACTCATCCCAAAGCTTACGAGCCGCGGGTGGTGTCATTGGGCCCATACAACCACGGGAAGCAACATCTGTCACCCATGGAGCTGGAGAAGCTAAAACTGTTCTACTCTTTTAAAACCCGATGTCTGTTGGACGTTGAATCCATTGTGAAGGGTGTGTCCACCATTTTGGATGAGCTCATGGAATCATACGATAAGCTTGAGGAAGAATGGACGGAAGACCCCGGCAAGTTCTTGCAGCTCATGATTGTGGATGGGTGTTTCATGCTGGGATTCTTAATCAACTGCCCCGACTCTCTAATTAATGTCAGTCCGGATATAAAACAGGACATGCTGCTGCTTGAGAATCAGCTACCCATGCTGCTTCTTGAGAAGCTGTATTCTATAGCAGCCCGTAATGATCTGCAAAAACTGGTTTCCAATTGGTTGAACATCCCCCGGAATGAGGTAATGAAAGACTGCTTGCACATTTTGGAGATGTATAAGGAATCGTTATTGCATCCTCCGATTGACCGGACGGACTGGAGCGTGGAGCTTGACCATTCAGATCCGGAGAGTCAGGTGATTCCGCCGGCAACGAAGCTTCGTGAAGCGGGGATCAAATTCAAGAGGAGCAAGACAGATAGCCTTACGGACGTGTTTTTCGATGCAAAAGGAGGCGTGTTGTGGCTGCCGCAGTTGATGGTGGACGACGACACGGAATCCACGTTGTTGAATGTGATGGCGTTCGAGAAACTCCACATGAAGGCTGGACGCAGAGTGACGTCTTTCGTGATCTTGATGAGTAATCTGATAGACGATGAGAGAGATGTGGCGGTGCTGGCGGGCGAGAAGGTATTGGCAAATGCGGTTGGGAATGATAAAGAAGCGGCGGGTTTGTTCAATCGGCTGGGGAGTGGGGCGGCTATGGGCTTGGATACCCACATGGCTGGGGTGCACAAGAAGGTGAATGAGCATTGCAACCAGCCCTGGAATGAACGCTGCGCAACTCTGAAACACGACTACTTTCAAAGCCCATGGACTATCATCTCCTTATGCGCTGCTATTTTTGGTTTCATCATCCTGATTCTCCAGGCCATCTACCAGTTTCTTGATTACTACCTCAAGCCCTGA 1299 48.88 MEKHPSLQVMLGRDDNIGDKADMVVQVKGTLDQLLDSPAILNMEAEQSSELLSIYKIPFFMTQTHPKAYEPRVVSLGPYNHGKQHLSPMELEKLKLFYSFKTRCLLDVESIVKGVSTILDELMESYDKLEEEWTEDPGKFLQLMIVDGCFMLGFLINCPDSLINVSPDIKQDMLLLENQLPMLLLEKLYSIAARNDLQKLVSNWLNIPRNEVMKDCLHILEMYKESLLHPPIDRTDWSVELDHSDPESQVIPPATKLREAGIKFKRSKTDSLTDVFFDAKGGVLWLPQLMVDDDTESTLLNVMAFEKLHMKAGRRVTSFVILMSNLIDDERDVAVLAGEKVLANAVGNDKEAAGLFNRLGSGAAMGLDTHMAGVHKKVNEHCNQPWNERCATLKHDYFQSPWTIISLCAAIFGFIILILQAIYQFLDYYLKP 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7278335 7279738 + Cp4.1LG17g09520.1 Cpe17g00949 484267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00949 432 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 46 429 IPR004158 -
Cpe17g00949 432 Coils Coil 112 132 - -
Cpe17g00949 432 Pfam Plant protein of unknown function 54 415 IPR004158 -
Cpe17g00949 432 PANTHER OS08G0337800 PROTEIN 46 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00949 - - - cmos:111461034 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00998 Cpe-Chr6:10102115 Cpe17g00949 Cpe-Chr17:7278335 7.47E-71 dispersed
Cpe06g00999 Cpe-Chr6:10123990 Cpe17g00949 Cpe-Chr17:7278335 5.01E-28 dispersed
Cpe10g00451 Cpe-Chr10:2629913 Cpe17g00949 Cpe-Chr17:7278335 5.30E-62 dispersed
Cpe12g00517 Cpe-Chr12:5263810 Cpe17g00949 Cpe-Chr17:7278335 9.80E-14 dispersed
Cpe17g00949 Cpe-Chr17:7278335 Cpe11g00339 Cpe-Chr11:1797289 1.01E-08 dispersed
Cpe17g00949 Cpe-Chr17:7278335 Cpe19g00639 Cpe-Chr19:5164280 8.28E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1387 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00150 Cam06g0064 Cec06g0166 Cco06g0160 Clacu06g0161 Cmu06g0158 Cre06g0932 . . . . . . Chy11g01840 Cme11g02376 . . . . . . . . Sed09g0351 . . . . . . Cpe17g00949 . Bhi12g02379 Tan06g1430 Cmetu11g0377 . Hepe03g1179 . . . . . . . . . Lsi09g01778 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001248 0 1 0 0 0 1 6 2 2 4 1 2 2 2 4 8 1 0 5 1 3 1 1 5 2 4 2 10 3 0 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00949 Cpe_Chr17 FPKM 6.529732 7.522253 7.623404 6.765603 3.191295 3.617884 3.738602 4.8817 4.628133 5.430121