Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00969 ATGGCTTCTACTACTGGTCTTGTAGTTGGATCTTTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGCGAAGTTTTAGAAATTCGTGGCGATGAAGTTAAAGTCGTATGCACCTCGGGGAAGACGGTTGTAGTTAAAGCAGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCATGTGGGGTGGATGACATGACCAAGTTGGCTTACTTACACGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAACGAAATATATACTTATACGGGGAACATATTGATTGCGGTGAACCCTTTTACAAAGTTACCTCATCTCTATGATAGCTACATGATGGCACAATATAAAGGGGCTGCATTCGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGGCATTTTTCCACAATATTGTTACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACGAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTACTGAAGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTCTAGAAGCATTTGGGAATGCAAAGACGGTTCGGAACAACAACTCAAGTCGATTCGGTAAGTTTGTGGAGATCCAATTTGACCAAAGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCAGATCCGGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCGCCACCTGAGGAGGTTAAGAAGTATAAATTGGGAAACCCAAGAGATTTCCATTATCTAAATCAATCAAATTGCTATGAGTTGGATGGAATTGATGATGCCGAGGAATATATTGCTACGAGAAAAGCAATGGAAGTCGTTGGAATAAGTTTGGATGAGCAGGATGGAATTTTTCGTGTCGTGGCTGCAATTCTTCATCTTGGAAACATAGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGATGAAAAATCTTGGTTCCATCTTAGAACTGCTGCTGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGATTCTCTCTGCAAACGTGTGATCGTCACTCGTGATGAAACTATCACAAAGTGGCTGGATCCAAATTCTGCAGCTCTTAGCCGAGATGCTCTGGCAAAAATTGTATACTCTAGGTTGTTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGTCAGGACCCTGATTCAAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTACACTAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATCATTGCCCTTCTGGATGAAGCTTGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAGAAGTTGTATCAGACATTCAAAAACCATAAACGCTTCAGCAAACCAAAATTAGCCCGGAGTGACTTCACCATTGTTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGACTACGTTGTTGCTGAACATCAAGCGCTCTTGGGTGCCTCCAAATGCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCGAAGTTCTCATCTATAGGTTCTCGTTTCAAGCTGCAATTGGTAGCACTTCTGGAAACTCTAAGTGCTACCGAGCCCCATTACATTCGATGTGGAGTCATGGAAGCAATTAGGATAAGTTGTGCTGGTTTTCCATCAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCCGAAGTTTTGGATGGAAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATACCAGATCGGTAAGACAAAAGTCTTTCTTAGAGCTGGTCAGATGGCTGAACTTGATGCACTCAGGACTGAGATTTTAGGGAGATCTGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATTTGGCACGTAGAAGTTTTGTGTTGCTTCGGAGGTCAGCTACACATCTACAATCTGCATGTAGAGGACAACTTGCCCGACAAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTATAATGATTCAAAGGAATTTGCGCATGCATATCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCGGTCTAAAGCAGCAATTATTATTCAGAGCTACTGTCGCAGATATTTGGCTCAGCTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAACTGAAGATGGCTGCAAAGGAAACAGGAGCTCTTCAAGCCGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACGTGGAGGCTGCAGTTGGAGAAGCGCATGAGGGCTGATTTGGAAGAAGCTAAAACACAAGAAAACGAGAAGCTGCAATCTGCTTTGCAAAATATGCAGCTTCAGTTGAAAGAAACAAGAACGATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCCGATATTATTCCAATTGTGAAGGAGGTTCCAGTTATTGATAATGCGATAATCGAGAAAATTTCTGGTGAAAACGAAAAGCTCAAGGCGTTGGTTTGTTCACTGGAAAAGAAAATTGGCGAAACAGAGAAAAAATATGAAGAGGCGAACAGAGTTAGTGAAGAACGGTTGAAGCAAGCATCGGAGGCCGAAACAAAAATCATTCAATTAAAGACTGCAATGCAGAGGCTTGAACAAAGATTCTCAAATATTGAATCTCAAAATCAGATTCTTCGCCAGCAGACCTTCATGACAACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGTAGCAGAGAAATTGGAGAACGGTAGCCATTTGATTGAAGATAACAAAATCGATGAGCAGCTCGTAACACCCGTGAAAGCGCTGAAGAGAATTAACTCAGAATCTGAAATTAAGTTGAGTCGACCTCTTTTCGAAAATCAACACGAGAATGTTGATGCTCTTGTCAGTTGTGTCATGAACAACATTGGGTTCAGTAATGGGAAGCCTGTAGCTGCCTTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTCGAAGCCGAAAAAACAAGTGTGTTCGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAATAATGATCATCTCGCCTATTGGTTGTCGAACACATCTGCGCTACTGTTCTTGCTTCAAAGAAGCTTGAAAGCTGCCGGTGCTCCCCGAAAACCACCAACTTCAACATCCTTATTTGGAAGGATGACTATGGGTTTTCGTTCGTCTCCGTCTTCCAACAGTCTTGGATCTGCGCTTAAGGTCGTGCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGTTGACTGCATATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACATCATTGCTGTCCTTGTGTATCCAAGTACCAAGAACATCGAAGGGAGTATTACGATCGGGAAGATCATTTGGAAAAGATACTCAAACAAATTACTGGCAGAGCATCATAGAATGCCTCAACATGCTTCTGTGCACATTGAAAGAAAATTTTGTTCCGCAAATACTTACCCAGAATATCTTTGTTCAAAACTTTTCATATATTAATGTTCAACTCTTCAATAGCCTTCTTCTTCGTCGAGAATGTTGTACGTTCAGCAATGGGGAATATGTCAAATCCGGGTTAGCTGAGTTGGAGCTCTGGTGCTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCATATGATGAAATCACCAATGATCTTTGCCCGATTCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGATGACAACTATAACACTCGAAGCGTGTCGCCTGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAGTGCAGTTAGCAGTTCCTTCCTATTGGATGACAATTCTAGCATCCCTTTCTCGGTCGAAGACCTCTCGAACTCACTGCAAGAGAAAGATTTCTGCGGCGTGAAGCCTGCCGACGACTTGCTTGAGAACCCAGCCTTCCAATTTTTAAACGAGTGA 4476 41.73 MASTTGLVVGSFVWLEDSEEAWIEGEVLEIRGDEVKVVCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTKLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRHFSTILLLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRDFHYLNQSNCYELDGIDDAEEYIATRKAMEVVGISLDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTIVHYAGDVTYQTDLFLDKNKDYVVAEHQALLGASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVALLETLSATEPHYIRCGVMEAIRISCAGFPSRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVLLRRSATHLQSACRGQLARQVFEGMRREASSIMIQRNLRMHICRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRSKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQNMQLQLKETRTMFEKEREAAKKAADIIPIVKEVPVIDNAIIEKISGENEKLKALVCSLEKKIGETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEQRFSNIESQNQILRQQTFMTTPVKKMADHLPIAVAEKLENGSHLIEDNKIDEQLVTPVKALKRINSESEIKLSRPLFENQHENVDALVSCVMNNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPTSTSLFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQVPRTSKGVLRSGRSFGKDTQTNYWQSIIECLNMLLCTLKENFVPQILTQNIFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNSAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFCGVKPADDLLENPAFQFLNE 1491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7393051 7404433 + Cp4.1LG17g09630.1 Cpe17g00969 484287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00969 1491 Pfam IQ calmodulin-binding motif 839 858 IPR000048 GO:0005515
Cpe17g00969 1491 Pfam IQ calmodulin-binding motif 768 787 IPR000048 GO:0005515
Cpe17g00969 1491 Pfam IQ calmodulin-binding motif 720 738 IPR000048 GO:0005515
Cpe17g00969 1491 Pfam IQ calmodulin-binding motif 816 835 IPR000048 GO:0005515
Cpe17g00969 1491 Pfam IQ calmodulin-binding motif 742 761 IPR000048 GO:0005515
Cpe17g00969 1491 Coils Coil 860 933 - -
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 814 843 IPR000048 GO:0005515
Cpe17g00969 1491 Gene3D - 259 317 - -
Cpe17g00969 1491 Pfam DIL domain 1313 1416 IPR002710 -
Cpe17g00969 1491 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 PRINTS Myosin heavy chain signature 203 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 PRINTS Myosin heavy chain signature 436 464 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 PRINTS Myosin heavy chain signature 156 181 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 PRINTS Myosin heavy chain signature 489 517 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 ProSiteProfiles Dilute domain profile. 1142 1437 IPR002710 -
Cpe17g00969 1491 Gene3D Kinesin motor domain 65 637 IPR036961 -
Cpe17g00969 1491 SMART iq_5 717 739 IPR000048 GO:0005515
Cpe17g00969 1491 SMART iq_5 740 762 IPR000048 GO:0005515
Cpe17g00969 1491 SMART iq_5 788 810 IPR000048 GO:0005515
Cpe17g00969 1491 SMART iq_5 836 858 IPR000048 GO:0005515
Cpe17g00969 1491 SMART iq_5 765 787 IPR000048 GO:0005515
Cpe17g00969 1491 SMART iq_5 813 835 IPR000048 GO:0005515
Cpe17g00969 1491 CDD MyosinXI_CBD 1093 1460 IPR037975 GO:0007015
Cpe17g00969 1491 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 SMART MYSc_2a 57 716 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 866 IPR027417 -
Cpe17g00969 1491 PANTHER MYOSIN-14 6 637 - -
Cpe17g00969 1491 PANTHER MYOSIN-14 638 1489 - -
Cpe17g00969 1491 SMART DIL_2 1312 1419 IPR002710 -
Cpe17g00969 1491 Pfam Myosin head (motor domain) 64 637 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 Pfam Myosin head (motor domain) 638 703 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 Gene3D - 718 767 - -
Cpe17g00969 1491 Gene3D - 768 815 - -
Cpe17g00969 1491 Gene3D - 816 865 - -
Cpe17g00969 1491 ProSiteProfiles Myosin motor domain profile. 62 715 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 Coils Coil 980 1031 - -
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 741 770 IPR000048 GO:0005515
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Cpe17g00969 1491 Gene3D Myosin VI head, motor domain, U50 subdomain 319 608 - -
Cpe17g00969 1491 Gene3D - 649 716 - -
Cpe17g00969 1491 Gene3D - 11 55 IPR008989 GO:0003774|GO:0005524|GO:0051015
Cpe17g00969 1491 CDD MYSc_Myo11 76 703 IPR036018 -
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Cpe17g00969 1491 PANTHER MYOSIN 638 1489 - -
Cpe17g00969 1491 PANTHER MYOSIN 6 637 - -
Cpe17g00969 1491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 768 IPR027417 -
Cpe17g00969 1491 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cpe17g00969 1491 Gene3D - 446 630 - -
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 837 866 IPR000048 GO:0005515
Cpe17g00969 1491 ProSiteProfiles IQ motif profile. 720 747 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01163 Cpe17g00969 CCT
Cpe12g01163 Cpe17g00969 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00648 Cpe-Chr17:5286872 Cpe17g00969 Cpe-Chr17:7393051 0 dispersed
Cpe17g00969 Cpe-Chr17:7393051 Cpe18g00337 Cpe-Chr18:4819598 0 dispersed
Cpe08g00366 Cpe-Chr8:2271354 Cpe17g00969 Cpe-Chr17:7393051 0 transposed
Cpe20g00372 Cpe-Chr20:2091595 Cpe17g00969 Cpe-Chr17:7393051 8.23E-07 transposed
Cpe12g01163 Cpe-Chr12:9542854 Cpe17g00969 Cpe-Chr17:7393051 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00969 K10357 - csv:101208630 2759.56