Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00978 ATGTGGAAATTGAAAGATCTGCATGCAGGGATTGTAAATGAGCAACAAGAACAAGAACAACATCAAATGGATCAGACACAGATTTGGTTTCCTCAAAATCATCAAAACTTTCTGTCTGATGATGACGACACTCTAATGTTCTACTCTGATTTCCCTCCGCTGTCGGATTTCCCTTGCATGTCATCGTCGTCCTCGTCGTCCTCGTCGTTGACTCCGGCTCCGGATTTGCAATTGGAGAGCTTTGAAGAAGTGGTAATGGAGGATTTGATGATGATGCATGAAGAAGGTGGGAATAAAATTGATGAGGGGAAGCAAAACGACGTCGTAGTGGAGGAGGAGGATGATATGGCGAAGGTGTTCTTGGAGTGGTTGAGGAGTAATAAAGAGACGGTTTCTGCTGATGATTTGAGGAATGTTAGGATTAAAAAAGCCACAATTGACAGCGCCGCCCGCCGTCTCGGCGGCGGCAAGGAGGGAATGAAGCAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACCAATCATCTTCACAAGAGGAAATTCAAAGACGAAGCGAATTTCTTAGGGTTTCAAGCTCCGCTGCCCTCTCCGCCGATGATCGGTTATGTCCCGGCTGGCGGTGGAGATGCATACGCCACCAGCCATGGTTTTTCTGATCATTACCAATTACTTGACTCCCCATTTGCGCCGTGTTTCAATTCATTCATTGACAATTTTGCGGTGGGGCCGCCTCCGTTACCGCTGCAACCCCATGGTATCGCAGCCGGGTACGGCGGTGGCCATCAGTACCACCCTTACATGGGTCAGTATTTTCAAGGGCAGGGTGGTGGTGGTGGTGATACTAGTTTAGTTAGGCTGGATTCCTCCGCCACGAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTTTCAGCTCACCACCGTCACGGTGGCCACCAGAATCAGCATCCAACTCAGATGAATACTAATGCTTCAGATCATTGCACCATGGCTACAACTGCTCAGCCCAATTCTACAAACTGGGTCTACTGGCCATCCCTCACCGGTGCCGGTTGTCCAGTCGACTCGTCTCCTGTACATTCTATCGATCGGCTTAATCAGAACTTTCCACTGCCGATCCCAACGCATCGGCGACAGGGATGGAAATCAGAGAAGAATTTGAGGTTTCTTTTACAGAAGGTGTTGAAGCAAAGCGATGTGGGAAATTTGGGGAGAATTGTATTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGCATTTCCATTGCCATGGAAGATATTGGAACCTCCAAAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCCGAATGTATCTGCTTGAAAACACAGGGGACTTTGTGAGAGCCAATGGCCTTCAAGAAGGAGACTTCATTGTCATCTACTCGGATGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGACAACCGGGGTCGAAACCCGACAGCAAAAGGCCGGGAAAGTTGCAGAGAAAGGGCTCGACATCTTCACCCACGGCGGTCGCGACCTTGAAAAGGCAGTGA 1584 48.55 MWKLKDLHAGIVNEQQEQEQHQMDQTQIWFPQNHQNFLSDDDDTLMFYSDFPPLSDFPCMSSSSSSSSSLTPAPDLQLESFEEVVMEDLMMMHEEGGNKIDEGKQNDVVVEEEDDMAKVFLEWLRSNKETVSADDLRNVRIKKATIDSAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDEANFLGFQAPLPSPPMIGYVPAGGGDAYATSHGFSDHYQLLDSPFAPCFNSFIDNFAVGPPPLPLQPHGIAAGYGGGHQYHPYMGQYFQGQGGGGGDTSLVRLDSSATKEARKKRMARQRRFSAHHRHGGHQNQHPTQMNTNASDHCTMATTAQPNSTNWVYWPSLTGAGCPVDSSPVHSIDRLNQNFPLPIPTHRRQGWKSEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSKVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRPGKLQRKGSTSSPTAVATLKRQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7463183 7466946 + Cp4.1LG17g09760.1 Cpe17g00978 484296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00978 527 MobiDBLite consensus disorder prediction 510 527 - -
Cpe17g00978 527 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 508 - -
Cpe17g00978 527 Pfam B3 DNA binding domain 394 490 IPR003340 GO:0003677
Cpe17g00978 527 Gene3D - 383 498 IPR015300 -
Cpe17g00978 527 SMART B3_2 393 495 IPR003340 GO:0003677
Cpe17g00978 527 CDD BfiI_C_EcoRII_N_B3 391 492 - -
Cpe17g00978 527 ProSiteProfiles B3 DNA-binding domain profile. 393 495 IPR003340 GO:0003677
Cpe17g00978 527 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 508 IPR044800 GO:0003700
Cpe17g00978 527 MobiDBLite consensus disorder prediction 495 527 - -
Cpe17g00978 527 SUPERFAMILY DNA-binding pseudobarrel domain 392 488 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01066 Cpe17g00978 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00523 Cpe-Chr13:5335659 Cpe17g00978 Cpe-Chr17:7463183 3.01E-28 dispersed
Cpe17g00978 Cpe-Chr17:7463183 Cpe01g01766 Cpe-Chr1:13371389 4.86E-11 dispersed
Cpe12g01066 Cpe-Chr12:8893190 Cpe17g00978 Cpe-Chr17:7463183 7.41E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50842 PF02362 B3 1.20E-17 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00978 - - cmax:111498106 869.766