Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00980 ATGGTGGGTTTGAAGCTTTTGGCTCTCTGTATTTCATTCTTCTTGTTGAACAGAGCCCCTGTTCGAGGTGGTGATTCCTTGCATTTCCCTTCTTCTGATGTTCAGCTTCTTCTGGAAAAGATCAGAGCTTCACTTGAAGGTGATACTCAAAACTTGCTTTTGTCTTCATGGAATTACTCTTTGCCACTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAATGGAACATCTCTGGTTTGCAGTGATTCTTCTTCTCCCCAGTGGTCTAATCTCACTCTCTTCAAAGACCCTTCTCTTCATCTTCTCTCCCTGCAACTTCCTTCTGCTAACCTCTCCGGTTCCTTGCCTAAGGAGCTTGGCTTGATGGGAATTCATTATCTGGGTCTCTGCCCGAGCCGGCTTTACCAGATTCCACCTGCAAGAGTTTGGAGGCTTTGGATTTTGGAAACAACCAGATTTCAGGGCTTGAAAGAGCTTGATCTTGGGAACAATTTGCTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAATAACAACTTCAGTGGAACATTGCCTGTGTTTGGTAATAACTCAAAGTTTGGTGTGGAGGCTTTTGAAGGGAACAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGGAGCTTCTCATTTGAGTTCAGGCGCCATTGCTGGTCTTGTTATCGGCTTGATGACTGGGACGGTTGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGATAACTGAGAGTGAAGATGAGATTGAGGAAGGAGAAGATGAAGAAAATGGGGGTGGCGGTATCGGCGGCGGCACAGGTGGTGAAGGAAAGCTCATTTTGTTTCAGGGTGGTGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACGATATATAAAGCAAAGCTTGCTGATGGAGGTACCATTGCTCTGAGACTCCTGAGGGAAGGTAGTTGCAAAGACAGAAACACTTGCTCGTCTGTGATTAAACAATTGGGGAAGATTCGCCATGAGAATTTGATTCCTTTGAGAGCGTTCTATCAGGGAAAGAGAGGTGAAAAGCTGCTCATTTATGACTATCTGCCCATCAGAACTTTACATGATTTTCTTCATGATGTGTATGCATTTGGGATCTTGCTGTTAGAGATTCTGATTGGGAAGAAGCCAGGGAAGAGTGGAAGAAGTGGAGAGTTTGTGGACCTGCCATCGATGGTAAAAGTGGCAGTTCTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTTTTGAAAGGAATTAGAAGCCCCATGGAAGATGGAGTGGTTCAGGCATTGAAGCTCGCAATGGGCTGCTGTGCACCAGTGGCTTCTGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGCTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGTCCAACAGAAACAAGAAGTGAAATTGGCTCTGGCTCTGGCTCTGGCTCTGGCTCTGTCTCGCGTTTCCTCCGTCCAAGTTGCTTGAAGAATGCTCTCACAGCTCCTTCGACCCCGTCCTCGTTCTTGAGAACCTTTGCAAGCTCCACAGCCTGCCTTTTTACCTGTCATTTTATAGCATTCACCAATCTTGGAAGCGAGAACTCGTCAACCGGGATAGGTGGAGGGCCAACTCCTCTGGCATGTACTCTATCCCCCCAGAAAGGTTGGTCACCAAAGAATGGAACAACTGATTACCTGCAAACGCTTGGCGATTGGGATAAATGGCTGCACATCTCCCCGGGTACCTACAATGAGCATTACAATTTGCATAGGCCTTATATACTCAAACTCAGCTTCATCCAGGGGTTCATCAGATTCAACATTAATCGATTCGGATTCGATGTTTCCTTCAACTTCAAACTCAACACTTCCATCATCCTTCACGGGCATCTGCAGCAAATATGGTTTCGCGTCTATGCGTCTCGGTTTTTGATCTTTGAAGGCGGTGCTCGCGTGAGACTGATTCCGTACTGTGTGAAGGTATCTCCACATGGAGGGTATTGGCTTTCAAAAGAGTTCGGCATGAAGCACCTAAAGCAGTGTAAT 2145 46.11 MVGLKLLALCISFFLLNRAPVRGGDSLHFPSSDVQLLLEKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSNGTSLVCSDSSSPQWSNLTLFKDPSLHLLSLQLPSANLSGSLPKELGLMGIHYLGLCPSRLYQIPPARVWRLWILETTRFQGLKELDLGNNLLSGQIPQSLGQLELEKLNLSNNNFSGTLPVFGNNSKFGVEAFEGNSPGLCGEPLKSCAGASHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKITESEDEIEEGEDEENGGGGIGGGTGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNTCSSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHDVYAFGILLLEILIGKKPGKSGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGSGSGSGSGSVSRFLRPSCLKNALTAPSTPSSFLRTFASSTACLFTCHFIAFTNLGSENSSTGIGGGPTPLACTLSPQKGWSPKNGTTDYLQTLGDWDKWLHISPGTYNEHYNLHRPYILKLSFIQGFIRFNINRFGFDVSFNFKLNTSIILHGHLQQIWFRVYASRFLIFEGGARVRLIPYCVKVSPHGGYWLSKEFGMKHLKQCN 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7470080 7476887 + Cp4.1LG17g09860.1 Cpe17g00980 484298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00980 715 Coils Coil 256 276 - -
Cpe17g00980 715 MobiDBLite consensus disorder prediction 492 519 - -
Cpe17g00980 715 Gene3D Transferase(Phosphotransferase) domain 1 385 506 - -
Cpe17g00980 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 152 397 - -
Cpe17g00980 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 397 509 - -
Cpe17g00980 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 7 123 - -
Cpe17g00980 715 MobiDBLite consensus disorder prediction 493 519 - -
Cpe17g00980 715 Gene3D Phosphorylase Kinase; domain 1 295 384 - -
Cpe17g00980 715 SUPERFAMILY Protein kinase-like (PK-like) 315 493 IPR011009 -
Cpe17g00980 715 SUPERFAMILY L domain-like 47 197 - -
Cpe17g00980 715 Gene3D Ribonuclease Inhibitor 32 224 IPR032675 -
Cpe17g00980 715 MobiDBLite consensus disorder prediction 265 284 - -
Cpe17g00980 715 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 152 397 - -
Cpe17g00980 715 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 7 123 - -
Cpe17g00980 715 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 397 509 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g01067 Cpe17g00980 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00980 Cpe-Chr17:7470080 Cpe01g00100 Cpe-Chr1:585262 3.04E-58 dispersed
Cpe17g00980 Cpe-Chr17:7470080 Cpe12g01067 Cpe-Chr12:8904007 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00980 - - cmo:103497530 540.421