Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00989 ATGAAGGAGGAAAACCGACGTATCCCGGAATTGGAAAAAATGAGTCCCCTTTCATTTCAAACCGAATCTCAGATTTCTCCTGAATCCGCCATTGGAGGGGACCCAGAACCTCAAATCTTCCATTACGAGCCTGAATTCAGTTCCGAAGACGATCATGACGAGTACGTTGTTCTGACGGACTGGAACAACACGAAGAAAAAGAACAAGAAGAAGAACCAGATCTTGCTTGAGGGCTTTGTGGAGGCTTCAGATGAGGAAAATTTGACGAGGACGAAGAGTTTGACGGATGACGATCTCGAGGAGCTCAAGGGGTGTGTGGATCTAGGGTTTGCGTTTTGCTATGACGAGATTCCTGAGCTCTGTAACACCTTGCCGGCGCTCGAGCTCTGTTATTCGATGAGCCAGAAATTTATGGACGACCACCAGAAGGTTCCGGAACATTCTCCGCCCGAGTCGGTGGATTCGGGGTCCAGTCCGATTCCGAATTGGAAGATCTCTAGTCCTGGTGATCATCCAGAAGATGTTAAAGCGAGGCTCAAATATTGGGCGCAAGCGGTGGCTTGTACTGTTAGATTATGCAACTAA 585 48.21 MKEENRRIPELEKMSPLSFQTESQISPESAIGGDPEPQIFHYEPEFSSEDDHDEYVVLTDWNNTKKKNKKKNQILLEGFVEASDEENLTRTKSLTDDDLEELKGCVDLGFAFCYDEIPELCNTLPALELCYSMSQKFMDDHQKVPEHSPPESVDSGSSPIPNWKISSPGDHPEDVKARLKYWAQAVACTVRLCN 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7509464 7512123 + Cp4.1LG17g09750.1 Cpe17g00989 484307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00989 194 MobiDBLite consensus disorder prediction 141 169 - -
Cpe17g00989 194 MobiDBLite consensus disorder prediction 1 38 - -
Cpe17g00989 194 Pfam Protein of unknown function (DUF1685) 94 146 IPR012881 -
Cpe17g00989 194 PANTHER OSJNBA0071G03.3 PROTEIN 52 194 - -
Cpe17g00989 194 PANTHER EXPRESSED PROTEIN 52 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00989 - - - cmax:111498175 371.703
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01232 Cpe17g00989 CCT
Cpe08g00077 Cpe17g00989 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01232 Cpe-Chr3:10005960 Cpe17g00989 Cpe-Chr17:7509464 3.07E-68 dispersed
Cpe09g00794 Cpe-Chr9:7373228 Cpe17g00989 Cpe-Chr17:7509464 4.96E-07 dispersed
Cpe10g00436 Cpe-Chr10:2547491 Cpe17g00989 Cpe-Chr17:7509464 2.86E-21 dispersed
Cpe15g00823 Cpe-Chr15:8174305 Cpe17g00989 Cpe-Chr17:7509464 1.30E-07 dispersed
Cpe17g00989 Cpe-Chr17:7509464 Cpe19g00619 Cpe-Chr19:5066742 1.54E-20 dispersed
Cpe12g00506 Cpe-Chr12:4964832 Cpe17g00989 Cpe-Chr17:7509464 3.61E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1193 . . . . . . . . . . Cma06g01664 . Car06g01406 Car14g01297 . Cpe08g00077 Cpe03g01232 . . . . . . . . . . . . . . Cone14ag0576 . . Cone11ag0614 . . . Cme07g01904 . Blo07g00090 . . . . . Bma06g01421 . Cmo06g01658 . . . Car08g00063 . . Cpe17g00989 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001176 2 2 2 2 2 2 5 2 2 2 1 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00989 Cpe_Chr17 FPKM 0.150877 0.0 0.0 0.0 0.990937 0.924646 0.560715 0.292315 0.0 0.114893