Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00994 ATGAAGAACTCGGAGTCTGGTAGGCATTTGCTAGTGGCTTATGCTCCTCCTCCTGATAACATTTTTCATCCAGCGAACAAAAGTACGAATAATCGACAGCAAAGGAAGAAAGTGAGAATGCGCAAGTGGTTTTGTTGTTTTTGTCAAGTTGAAGAGACAAATGAGTCAACTGAAAATGAGCACTTGAAAAGCCCCACTAATTTTGGAGATGGCCACTCAAAGGGCCCAAACGTGTCAGCGCCTGTTAAACCTGAGGCACAAAAGGCAGCACCAACAATTGAAGTGCCTGCACTCTCCCTGGATGAACTGAAAGAAAAGACAGATAATTTTGGGTCGAAAGCATTGATTGGAGAAGGATCTTATGGTAGAGTTTACTATGCAAGCTTGAATAATGGGAAAAATGTAGCTGTAAAAAAGCTCGATGTTTCCTCTGAGCCTGACAGTAACTTTGAGTTTTTGACCCAGGTTTCTACAGTATCAAGATTGAAACATGAAAATTTTGTTGAATTGCTTGGATATTGTGTTGAAGGAAATCTTCGTGTATTGGCATATGAATATGCAACCATGGGATCTTTGCATGATGTGTTACATGGAAGGAAGGGAGTACAAGGAGCACAACCTGGTCCAGTGCTCGACTGGATGCAGCGAGTGAGAATTGCAGTTGATGCTGCCAAAGGACTGGAATACTTGCATGAGAAGGTTCAACCTGCTATTATACACCGAGATATCAGGTCCAGCAATGTGCTTCTCTTTGAGGATTTTAAAGCGAAGATAGCTGATTTTAACCTCTCCAATCAAGCCCCTGATATGGCAGCCCGTCTTCATTCAACTCGAGTTTTGGGAACTTTTGGTTACCATGCTCCAGAGTATGCAATGTCTGGACAGTTGACACAGAAGAGTGATGTATACAGCTTTGGTGTAGTTCTACTTGAGCTTTTGACTGGTAGGAAACCTGTCGATCACACGATGCCCCGCGGACAGCAAAGTTTAGTTACCTGGGCTACCCCAAGGCTAAGCGAGGACAAAGTGAAGCAATGTGTAGATCCAAGACTAAAGGGAGAATACCCTCCTAAAGGAATTGCGAAGCTAGCAGCGGTGGCTGCATTGTGTGTACAGTACGAATCTGAGTTCCGACCAAATATGAGCATAGTTGTGAAAGCCCTCCAACCTCTTTTGAAGCCCCCCGCACCTACCGGTCCCCCTGCGCCTGTGTCTTGA 1218 44.58 MKNSESGRHLLVAYAPPPDNIFHPANKSTNNRQQRKKVRMRKWFCCFCQVEETNESTENEHLKSPTNFGDGHSKGPNVSAPVKPEAQKAAPTIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYASLNNGKNVAVKKLDVSSEPDSNFEFLTQVSTVSRLKHENFVELLGYCVEGNLRVLAYEYATMGSLHDVLHGRKGVQGAQPGPVLDWMQRVRIAVDAAKGLEYLHEKVQPAIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMSGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGIAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPAPTGPPAPVS 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7541379 7546196 - Cp4.1LG17g10050.1 Cpe17g00994 484312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00994 405 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Cpe17g00994 405 ProSiteProfiles Protein kinase domain profile. 110 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00994 405 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 394 - -
Cpe17g00994 405 SMART tyrkin_6 110 388 IPR020635 GO:0004713|GO:0006468
Cpe17g00994 405 Gene3D Transferase(Phosphotransferase) domain 1 188 395 - -
Cpe17g00994 405 Pfam Protein tyrosine and serine/threonine kinase 115 388 IPR001245 GO:0004672|GO:0006468
Cpe17g00994 405 CDD STKc_IRAK 116 391 - -
Cpe17g00994 405 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 26 394 - -
Cpe17g00994 405 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
Cpe17g00994 405 SUPERFAMILY Protein kinase-like (PK-like) 91 388 IPR011009 -
Cpe17g00994 405 ProSitePatterns Tyrosine protein kinases specific active-site signature. 238 250 IPR008266 GO:0004672|GO:0006468
Cpe17g00994 405 MobiDBLite consensus disorder prediction 56 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00994 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101221382 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00093 Cpe17g00994 CCT
Cpe03g01253 Cpe17g00994 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00360 Cpe-Chr3:1916317 Cpe17g00994 Cpe-Chr17:7541379 1.53E-39 dispersed
Cpe03g01253 Cpe-Chr3:10153402 Cpe17g00994 Cpe-Chr17:7541379 1.10E-33 dispersed
Cpe08g00093 Cpe-Chr8:579297 Cpe17g00994 Cpe-Chr17:7541379 0 dispersed
Cpe08g01321 Cpe-Chr8:9489177 Cpe17g00994 Cpe-Chr17:7541379 3.29E-179 dispersed
Cpe17g00719 Cpe-Chr17:5738044 Cpe17g00994 Cpe-Chr17:7541379 7.11E-28 dispersed
Cpe17g00994 Cpe-Chr17:7541379 Cpe20g00626 Cpe-Chr20:3917624 1.42E-84 dispersed
Cpe12g00502 Cpe-Chr12:4916159 Cpe17g00994 Cpe-Chr17:7541379 5.04E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62962 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00994 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 25.66423 0.0 0.0 0.0 0.0 0.0