Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00996 ATGAGCAGTTTCAAGGATTTTTGTTCGAAAAAGACCGTAATCGGTCTTGGATTGGGACAATTTTTGTCTCTTCTTACCACTTTCACTGGCTCTGCATCCTCTGAACTCGCGAAAAGAGGAATTAATGCACCGACTTCACAGTCCTTTATAAACTATGTCCTCTTGGCCATTGTCTATGGAAGTATAGTGCTCTACCGTAAGAAAGCACTCAAGGCCAAATGGTACTTCTACGTACCACTAGGATTGGTAGATGTAGAAGCCAACTACCTTGTTGTGAAGGCCTATCAGTACACATCTCTCACAAGTGTCATGCTGCTGGATTGTTGGACAATCCCTTGTGTTATGCTGCTAACCTGGCTTTTCCTGAAAACAAAATACAGATTCAGGAAGATAGCTGGTGTTGTTGTTTGTGTTGCTGGTCTTGTCATGGTCATTTTTTCTGATGTTCACGCTGGAGGAACCAGCCCACTTAAAGGGGATGCTCTTGTTATAGCTGCTGCTACCCTTTATGCAGTTACTAATGTCAGCGTGGAATTTCTGGTGAAGAATGCTGATAGAGTTGAGCTAATGGCGATGTTGGGCACCTTCGGTGCCATCGTCAGTGCAATTCAAATAAGCATAATTGAGCGCAATGAATTAAAATCCATTCGATGGACAGCCGGAGCAGCAATTCCTTTTGCTGGGTTTTCTGTGGCTATGTTCATGTTTTACTCGCTTGTCCCTGTACTGCTTCAGGTTAGCGGATCCACAATGTTGAACCTCTCTTTACTGACCTCGGACATGTGGTCGATCGTAATTCGTGTCATCGCATATAACGAGATGGTTGATTGGATTTACTACTTGGCCTTTGCTGTTGTTGTCATTGGACTTATTATTTATTCAGTATTTAGGCCGGGAACGGTGGCGCTGAGGGAAATTAGAAAGTACCAGAAGAGCACCGAGCTTCTAATCCGTAAGCTTCCGTTCCAGCGGCTCGTTAGAGAGATCGCTCAGGACTTCAAGACTGATCTCCGGTTCCAAAGCAGCGCCGTAGCGGCATTGCAGGAGGCGGCAGAAGCCTATCTCGTCGGATTGTTCGAGGATACTAACCTCTGTGCAATTCATGCTAAGAGAGTTACGATTATGCCTAAGGATATTCAATTGGCGAGGAGAATTAGAGGCGAGAGAGCTTAG 1173 45.1 MSSFKDFCSKKTVIGLGLGQFLSLLTTFTGSASSELAKRGINAPTSQSFINYVLLAIVYGSIVLYRKKALKAKWYFYVPLGLVDVEANYLVVKAYQYTSLTSVMLLDCWTIPCVMLLTWLFLKTKYRFRKIAGVVVCVAGLVMVIFSDVHAGGTSPLKGDALVIAAATLYAVTNVSVEFLVKNADRVELMAMLGTFGAIVSAIQISIIERNELKSIRWTAGAAIPFAGFSVAMFMFYSLVPVLLQVSGSTMLNLSLLTSDMWSIVIRVIAYNEMVDWIYYLAFAVVVIGLIIYSVFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7557445 7564436 + Cp4.1LG17g09990.1 Cpe17g00996 484314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00996 390 PANTHER OS09G0513200 PROTEIN 4 297 - -
Cpe17g00996 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 64 148 - -
Cpe17g00996 390 SMART h35 288 390 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 PANTHER DUF914-RELATED 4 297 - -
Cpe17g00996 390 PRINTS Histone H3 signature 368 389 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 PRINTS Histone H3 signature 312 329 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 PRINTS Histone H3 signature 334 352 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 PRINTS Histone H3 signature 288 309 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 PRINTS Histone H3 signature 352 368 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cpe17g00996 390 SUPERFAMILY Histone-fold 296 387 IPR009072 GO:0046982
Cpe17g00996 390 Gene3D Histone, subunit A 294 390 IPR009072 GO:0046982
Cpe17g00996 390 Pfam Solute carrier family 35 9 295 IPR009262 GO:0016021|GO:0022857|GO:0055085
Cpe17g00996 390 Pfam Core histone H2A/H2B/H3/H4 295 386 IPR007125 GO:0003677
Cpe17g00996 390 ProSitePatterns Histone H3 signature 2. 321 329 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00996 K15287 SLC35F1_2; solute carrier family 35, member F1/2 - csv:101220907 521.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01255 Cpe17g00996 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01255 Cpe-Chr3:10167111 Cpe17g00996 Cpe-Chr17:7557445 7.01E-146 dispersed
Cpe12g00811 Cpe-Chr12:7283956 Cpe17g00996 Cpe-Chr17:7557445 7.44E-64 dispersed
Cpe16g00896 Cpe-Chr16:8399610 Cpe17g00996 Cpe-Chr17:7557445 2.72E-64 dispersed
Cpe17g00671 Cpe-Chr17:5409796 Cpe17g00996 Cpe-Chr17:7557445 2.72E-64 dispersed
Cpe17g00996 Cpe-Chr17:7557445 Cpe18g00156 Cpe-Chr18:3195272 7.81E-64 dispersed
Cpe12g00499 Cpe-Chr12:4890428 Cpe17g00996 Cpe-Chr17:7557445 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1134 . . . . . . Bma04g01002 . Cmo08g00089 . . Cma14g01492 . Car14g01327 Sed02g1039 . Cpe03g01255 Bhi01g02639 Tan10g1241 Cmetu07g0051 . Hepe05g1271 . Lcy11g1222 . . . . . . . . Cone15ag0601 . . . . . . . . . . . . . . . . Cmo14g01530 . . Car08g00071 . . Cpe17g00996 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001794 1 5 2 2 2 2 3 2 2 1 2 2 3 2 2 3 2 5 3 2 1 1 2 1 2 1 2 2 4 5 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00996 Cpe_Chr17 FPKM 1003.815002 1066.418945 540.408691 519.340698 550.943481 627.042847 481.962097 1171.470825 1145.629272 1056.177612