Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00997 ATGTTGGCATTTTCCCTCTCTTTCAAGAGAGAGGTTAATAAGACAGTGCTTAAAGTTCCTCGATTGGAGCAGAAGGTTCTTGATGCTACTAGCAATGAGCCTTGGGGCCCCCATGGAACACTTCTTGCAGAGATTGCTCAAGCAAGCAAAAATTATCATGAGTGTCAGATGATCATGGCAGTAATTTGGAAGCGTGTTAATGACTCTGGCAAAAATTGGCGGCATGTATACAAGGGTTTAACTGTCTTGGAGTATCTGGTGGCTCATGGATCCGAACGAGTAATAGACGAAATCAAGGATCATGCATACCAATTATCAGGCTTGTCCAGCTTTCAATATATTGATTCTAGTGGAAGGGATCAAGGATCAAATGTACGAAAGAAGTCGCAGAGTCTTGTGCTGCTAGTGAACGATTCTGAAAGAATCAGTGAGATTAGGCAGAAGGCTAATACTAACAGGGACAAGTTTCGAAGTGCATCATTAGCTGGTGGAGCATATAGGCCAAACTCCAATGCTGGGGGGTATGGAGACCGTTATGATGATGATTATAATGAGGGACGCTATAGAAGCAGGGACGAAGATAGGAATAGCAATGGTTATGGAAGGGAAAGAGAATATGACTATAGAGCTGATGACCGTGGGAGGAATTCTGACTCAAATATACGTGATAGAGATCAATATAGGAGAGATGGTGAAGAACGCTATGGAAAAGATAGTCCCAGGGATGGTGATAGTTGGGGACGAAGAAGTGTTGATGATCACCGATATGGTTCAAGAAAGGATCAAGATAATGATCATGATGACAATGCACGTGATGGTAGTGGAAGAGGTGATGACAGGTCTCCAGACGTGAGGCGGCATGATCATAAATTTTCAGAGCAAGACACTGGTGCACCTCCTAGTTATGAAGAGGCAGTGAGCGAGTCTCAAAGCCCACCAGCTCATAATGATAGGGACCAAGAAATCTCAAACTCTGCTCCTGCTACTTCATCTGCGCTTGTTACCAGTGCACCTAGCCAGTCAAGTCCCGTTCCTGGTACTCCAACATCTGGAAACCAGTTAATTGGGTCCTTTGATGCATTTGATCCTCGCAGTTCAGTCACAGGTACTTCCCCCCTTTTTTCAGCTGCTCCAACTGTTCCACCAAACAATACTGAGATGGACTTACTTGGCTCACTGACGGATTTTCCTTCAAACCCATTGGCCATTATGCCAGTGGAGTCTGCAAACGTGACTGGAGCCTTCGAGCCTGATTCCCACATGAACTCTGGAGCAGGAACCTTGCACGCTACTATGTCAGTAGCTAGTGTCAGTAATCAGAGTTTTGAAGATCCTTTTGGCGACACTCCTTTTAAAGCTATGCTTTCTGATGATGGTGCCCCTCAATTCCATTCTTCTGCTATGACAGATTCTCTCCAGTCTTCCCTGCATCAAAGCCTTGGTCAACCCCAACCTTCTTCCATGACAGATCCTCTCCAGTCTTCCCTACACCAAAACCTTGGACAATCTCATCCTTCTACTATGACAGATCCTTTCCAGTCTTCTCTGCACCAAGGCCTTGGACAATCCCAAGGAGCTACACCGGAAACAAACCAAGTCTCTACTTCTGAATTTAGTAATGGATTTTCTGCTTCAACTGGTGCATCTGGCTTATCCAGTTTGCAAGCACCATCAGACCCACAGTTTCTTCCAGGGCCATCCACTATTCCAGAACCCGAGATTGATATACTGGCAGATATTCTACCTCCTTCTGGACCTCCATCTGGACCTCCATCTAACACAGCATCCCTGGCAACTTATTCATTCCCCAGCGACCAGCCTGCGTTGCCTACTCCCTTCTCAGATCCTGCTCAACCTCATCAAAATTTTACAGCTTTAAGCAATCAGCCTTCAAAACCAAATGATTGCTCCGTCCTTAATTTGCAACCCCAACCAGGAACTACGGCACCTTTGTACTCAAATATGGCTTTCCCGCCTCAAAGTGCACCTACTGGACAGCTTGGATATGGTGCCCCACAGGGAGGATCTACAGCACCTGCTGGTCAGTTAAGCTATGGGCCCCCACAGGGAGGATCTGCAGCACCTACTGGACAGTTTGGCTATGGGATGGCCCCACAGGGAGGATCTACAGCACCCACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACGGAACCTACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACAGCACCCACTGGACAGCTTGGCTATGGGGCCCCCCAGGGAGGATCTACAGCTCCTTTCTATCCACAGATGGCTTCAACAAGCAGTTCAAATCCGCAGGCTAATGGTGGTGGAGGCTATTTTATAGAGAATGTAGGATCTGCTGCTTCTGTTACGACACAAATTGCTCAGCAAAATCCAAGTGGGCCAGCTGCTCCACTTGGCAGTGGAAACATGCAGCATCATGGCGTTACATCCCAGCCATTAGCTTCACATGGAGCTTATCAGGTACAAAATGGACATGCTGCACAGCCAAGGAGTGATGATTTTCTGGGCAGCATTCTTCCGCAAGCTGCACCCCCTCAAGTTCCGTTACAACAAGGTTTTCCAACCTTAACAGATTCACTTTCAATAGCATCTCAACCGTCTAAGGGCAAATTTGAGACGAAGTCAACAGTCTGGACTGACACTCTTAACAGAGGGCTAGTTGATTTGAACATATCTGGCCCTAAAACAAATCCATTGGCAGACATTGGAGTGGATTTTGATTCCATAAATCGGAAAGAGAAGAGGATGGAAAAACCTACTACAACTGCAGTAACTTCTACTATCACCATGGGTAAAGCTATGGGATCTGGTTCTGGAATGGGTCGTGCCGGTGCGGGTGCCCTCAGAGCTCCATCTAACCCAATGATGGGTTCAGGTATGGGTATGAACAATGTTGGCATGGGAGGGCCTTACGGAGGAATCAATCAACCCATGGGAATGGGAATGGGTATGAGTATGGGTATGAACAATGCTGGTATGAATCCGGGAATGGGCATGGGCATGAACCCTGGGATGGGAATGAACCAGGGCATGAACCCTGGGATGGGAATGGGAATGAACCCGGGTATGAACCCTGGGATGGGAATGAACCCGGGTATGGGAATGAACCCTGGCATGGGAATGAATATGGGTATGGGACAAGGAATGCAATTCCGATCACCAGGTGGATATCAGCTGGGATCGAATGCTTCGGGTAGTTATAATCCAATGATGAGTGGGTACGCCCCCCAACAATCATATGGTGGTGGCTACCAATAA 3288 47.57 MLAFSLSFKREVNKTVLKVPRLEQKVLDATSNEPWGPHGTLLAEIAQASKNYHECQMIMAVIWKRVNDSGKNWRHVYKGLTVLEYLVAHGSERVIDEIKDHAYQLSGLSSFQYIDSSGRDQGSNVRKKSQSLVLLVNDSERISEIRQKANTNRDKFRSASLAGGAYRPNSNAGGYGDRYDDDYNEGRYRSRDEDRNSNGYGREREYDYRADDRGRNSDSNIRDRDQYRRDGEERYGKDSPRDGDSWGRRSVDDHRYGSRKDQDNDHDDNARDGSGRGDDRSPDVRRHDHKFSEQDTGAPPSYEEAVSESQSPPAHNDRDQEISNSAPATSSALVTSAPSQSSPVPGTPTSGNQLIGSFDAFDPRSSVTGTSPLFSAAPTVPPNNTEMDLLGSLTDFPSNPLAIMPVESANVTGAFEPDSHMNSGAGTLHATMSVASVSNQSFEDPFGDTPFKAMLSDDGAPQFHSSAMTDSLQSSLHQSLGQPQPSSMTDPLQSSLHQNLGQSHPSTMTDPFQSSLHQGLGQSQGATPETNQVSTSEFSNGFSASTGASGLSSLQAPSDPQFLPGPSTIPEPEIDILADILPPSGPPSGPPSNTASLATYSFPSDQPALPTPFSDPAQPHQNFTALSNQPSKPNDCSVLNLQPQPGTTAPLYSNMAFPPQSAPTGQLGYGAPQGGSTAPAGQLSYGPPQGGSAAPTGQFGYGMAPQGGSTAPTGQHGYGGPQGGSTEPTGQHGYGGPQGGSTAPTGQLGYGAPQGGSTAPFYPQMASTSSSNPQANGGGGYFIENVGSAASVTTQIAQQNPSGPAAPLGSGNMQHHGVTSQPLASHGAYQVQNGHAAQPRSDDFLGSILPQAAPPQVPLQQGFPTLTDSLSIASQPSKGKFETKSTVWTDTLNRGLVDLNISGPKTNPLADIGVDFDSINRKEKRMEKPTTTAVTSTITMGKAMGSGSGMGRAGAGALRAPSNPMMGSGMGMNNVGMGGPYGGINQPMGMGMGMSMGMNNAGMNPGMGMGMNPGMGMNQGMNPGMGMGMNPGMNPGMGMNPGMGMNPGMGMNMGMGQGMQFRSPGGYQLGSNASGSYNPMMSGYAPQQSYGGGYQ 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7565477 7572404 - Cp4.1LG17g10030.1 Cpe17g00997 484315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00997 1095 ProSiteProfiles ENTH domain profile. 14 146 IPR013809 -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 799 824 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 146 363 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 178 294 - -
Cpe17g00997 1095 CDD ENTH 22 138 - -
Cpe17g00997 1095 SUPERFAMILY ENTH/VHS domain 19 158 IPR008942 -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 462 562 - -
Cpe17g00997 1095 SMART enth_2 20 146 IPR013809 -
Cpe17g00997 1095 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 8 996 - -
Cpe17g00997 1095 Pfam ENTH domain 22 141 IPR013809 -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 303 356 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 591 608 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 449 756 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 708 752 - -
Cpe17g00997 1095 Gene3D - 19 159 IPR008942 -
Cpe17g00997 1095 PANTHER EPSIN/ENT-RELATED 8 996 - -
Cpe17g00997 1095 MobiDBLite consensus disorder prediction 615 683 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00997 K12471 EPN; epsin - csv:101209356 1413.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00095 Cpe17g00997 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00091 Cpe-Chr11:481512 Cpe17g00997 Cpe-Chr17:7565477 5.28E-11 dispersed
Cpe01g00188 Cpe-Chr1:1060462 Cpe17g00997 Cpe-Chr17:7565477 1.00E-11 transposed
Cpe12g00496 Cpe-Chr12:4875534 Cpe17g00997 Cpe-Chr17:7565477 4.43E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007301 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 9 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00997 Cpe_Chr17 FPKM 46.595238 51.537075 37.272255 31.054258 17.677677 19.161077 21.017244 46.464039 41.007431 52.264729