Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00999 ATGCAAATAGCTTGTCAACCCCATCCACTAGTTTACTTCTCAATCAGAAGCAGCTCTAAAAGACAAAGTGGATGGAAGAATGTACAAAACTTGCATTCAAGCAACTTTGTTAAACTTGTATTTGTGGAACCTCAGACTCGTAAATTTGCTATGCCTTTGTGCAAAAACAGATTGAATGCTATCCCAAATGCAGAAGATGGGCACCCTTCTGCCTCAATGTCAGAAGACATCAATTCAAATCCGGTGCTTAATTCTATAGAAGGAGAGTTGTGGAGTAAATGGTCGCCACCAAAGTATCTATGGAGAGGGCTATCAGTTCTTTTTCTGGCTGGGCAGGTCATTATGAGGACTTTAAAGGGTAAAGTCCATTGGAAAAATACTCTTCAACAGCTAGAGAGAGTAGGACCAAGATCTGTAGGGGTTTGCCTTCTAACATCTGCATTTGTTGGCATGGCCTTTACTATCCAATTTGTTAGAGAATTTACTAGATTAGGATTGAACAGATCTGTTGGTGGTGTATTAGCATTGGCATTCTCAAGGGAGCTGAGTCCTGTGATCACGTCGATTGTGGTTGCAGGACGAATCGGTAGTTCGTATGCTGCAGAATTAGGAACAATGCAAGTCTCTGAGCAGACAGACACGCTAAGAGTCTTGGGATCGAACCCTGTCGATTATCTCGTCACGCCAAGAGTTATAGCATCCTGCATTGCTCTTCCAATTCTAACTCTAATGTGTTTCACAGTTGGGATGGCATCAAGTGCCCTTTTGGCTGACAGCGTTTATGGTGTTAGTATCAACATTATCTTTGATTCAGCTCTGAGAGCTCTAAAGTCATGGGATATTATCAGCTCGATGATCAAATCGCAGGTTTTTGGAGCTATCATATCGATTGTAAGCTGTGCCTGGGGTATTACGACTTCCGGGGGCGCTAAGGGAGTCGGGGAGTCCACAACTTCGGCTGTAGTCATCTCTCTTGTAGGCATATTTATTGCTGATTTCACCCTTTCTTGTTTCTTCTTCCAGGGAGCTGGAGATTCCCTGAAGAACTGTATGTAA 1056 43.09 MQIACQPHPLVYFSIRSSSKRQSGWKNVQNLHSSNFVKLVFVEPQTRKFAMPLCKNRLNAIPNAEDGHPSASMSEDINSNPVLNSIEGELWSKWSPPKYLWRGLSVLFLAGQVIMRTLKGKVHWKNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVITSIVVAGRIGSSYAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASCIALPILTLMCFTVGMASSALLADSVYGVSINIIFDSALRALKSWDIISSMIKSQVFGAIISIVSCAWGITTSGGAKGVGESTTSAVVISLVGIFIADFTLSCFFFQGAGDSLKNCM 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7578402 7581477 + Cp4.1LG17g09940.1 Cpe17g00999 484317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00999 351 PANTHER ABC TRANSPORTER PERMEASE PROTEIN-RELATED 1 351 IPR030802 GO:0043190
Cpe17g00999 351 Pfam Permease MlaE 128 336 IPR030802 GO:0043190
Cpe17g00999 351 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 1, CHLOROPLASTIC 1 351 - -
Cpe17g00999 351 TIGRFAM TIGR00056: ABC transport permease subunit 103 342 IPR003453 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00999 - - - csv:101206602 657.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00492 Cpe-Chr12:4810493 Cpe17g00999 Cpe-Chr17:7578402 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1073 . . Bda03g01079 . Bpe04g00996 . Bma04g00993 . Cmo08g00093 . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0896 Cone11ag0608 . . . . . . . . . . . . . . . . . Car08g00074 . . Cpe17g00999 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004667 1 3 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g00999 Cpe_Chr17 FPKM 20.100386 22.098152 21.363169 21.550434 11.620394 14.187054 11.586089 36.455879 36.333851 33.362244