Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01008 ATGTGTTTGTGGTTGACGATCAAGGAGAAATTTAATACGCACCTTGGCGTTGAGTCTACTATCTTCTGCAACTGCAAAACCACACTCTCCCTTCTTCCTCCCGACGAAATGAGTTCCCAAGGAAATGACCCAAATTCTTCTTTGCCTAAACCCAGCCAACTCGAATGCAACCTGCGTCAAGCTCTCGCCGGCATCCAAAACCATTGCTCTGGGGTACTCCACAACCTTTCCAACCTTCCGCCCTTCAATCCCCCTCTTTCCCTCAAATCCCAACTTCAATCTACCTTCTCGAGCCTCCAAAACCAAGCGAAACGTGCACTTGACTCCAGAATTTCAGCCTTTGATCCCGTTGCTAAAAACCCGGTTTGGGCTCGGATTGCTGAAACTGCGAAGACCCCTCGCCCATATGCCCGGCCTACTGTCGCCTTGTCGACGGAAGCCATCGAAGAGCGGCTGGCTGGTATTCCTGTTTATGCCCTCAGCAATGCGTCTGAGGAATTCGTCTTGGTTTCTGGTGCTTCGACTGCAAAATCTCTGGGATTTTTTTGCTTTAATAAGGAGGATGCAGAAACGCTGCTTGGGCATATTGGAACAGTGGATCCTTCAGCGCAGAACGGCTCCAAAGTGGTGACCGTTGCCTTGAATAAAGTTTTTCAGCTTCATGTTAATGGGGTGGCCTTCAGATTGATTCCTGAGTGCTCTCAGGTGAAAAACGCTCTGAGTGAAAGAGAAAAGGCTGGCATTTCTGATAATGGATTTCCTGGGGTCCCTGTTTTCCAGTCGAAGAGCTTGATACTGAGGAGCCAAAACAAGAGTTACCGTCCTGCCTTTTTCAGAAAGGAGGATTTGGAGAATTCTCTAAAAAGAGCATCTCAGGACCAAAATCAAATGAATCCTGCCCTCCGACCTGGGGATGTACAGGTTGCTGCTTTTGAAGACATTATAAAAGGAATGAAGGATAATTCTATTTCAACATGGGATGATGTAGTCTTCATTCCTCCCGGATTTGATGTTTCAACTGACCCCAAAAAACAGCATTAG 1041 47.17 MCLWLTIKEKFNTHLGVESTIFCNCKTTLSLLPPDEMSSQGNDPNSSLPKPSQLECNLRQALAGIQNHCSGVLHNLSNLPPFNPPLSLKSQLQSTFSSLQNQAKRALDSRISAFDPVAKNPVWARIAETAKTPRPYARPTVALSTEAIEERLAGIPVYALSNASEEFVLVSGASTAKSLGFFCFNKEDAETLLGHIGTVDPSAQNGSKVVTVALNKVFQLHVNGVAFRLIPECSQVKNALSEREKAGISDNGFPGVPVFQSKSLILRSQNKSYRPAFFRKEDLENSLKRASQDQNQMNPALRPGDVQVAAFEDIIKGMKDNSISTWDDVVFIPPGFDVSTDPKKQH 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7654280 7661427 + Cp4.1LG17g10110.1 Cpe17g01008 484326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01008 346 Gene3D - 231 301 - -
Cpe17g01008 346 Gene3D - 147 230 - -
Cpe17g01008 346 Pfam Tic22-like family 95 341 IPR007378 GO:0015031
Cpe17g01008 346 PANTHER PROTEIN TIC 22-LIKE, CHLOROPLASTIC 53 344 - -
Cpe17g01008 346 PANTHER PROTEIN TIC 22, CHLOROPLASTIC 53 344 IPR007378 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01008 - - - cpep:111778489 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g01008 Cpe-Chr17:7654280 Cpe02g00176 Cpe-Chr2:900140 6.16E-31 transposed
Cpe17g01008 Cpe-Chr17:7654280 Cpe06g00156 Cpe-Chr6:843712 4.80E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1029 . . . . . . . . Cmo08g00107 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0543 Cone15ag0565 . . . . . . . . . . . . . . . . . . . Car08g00085 . . Cpe17g01008 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006725 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 1 1 3 1 1 1 2 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01008 Cpe_Chr17 FPKM 22.94972 24.236231 47.468723 48.420574 2.754106 2.671018 2.432607 105.464973 106.023315 113.483429