Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01016 ATGGAGTTGGATGGCCTCGAACGCGCGCCGCCGTCCATGGACGTGATGAACGAGGAGGACAAGACCCTTCAATGTCACTGTCAGTTTCCGTCGATTTCCAAGCCTCGGATCAGCAATAACGACAATCCGACCACTACAAGTGTCCACGAGCTGCTGGAATGTCCTGTCTGCACTAATTCTATGTATCCTCCAATTCATCAGTGTCCCAATGGACATACCCTCTGCTCTTCGTGTAAAACGAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATTAGATGTCTAGCATTAGAAAAGATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCTCGGAGATATTGCCGTACTATAGTAAACTAAAACATGAATCTGCCTGTTACTTCAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGAGATTCCTTTCCTTGTTTCTCATCTTCGAGACGATCACAAAGTCGATATGCATTCCGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTATATGGATGTTAACTGTCTTCCACTGTTTTGACCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTTGGTATGGCACCAGTTTACATGGTGTTTCTCCGATTCATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGGAATGGGAGGAAGCTAACGTGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCCGAGACAGCCACGATGGCCTCATTATACATCGAAACATGGCACTGTTCTTCTCGGGCGGGGAAAGGAAAGAGCTGAAGTTGCGGATCATGGGACGGATTTGGAAAGAACAAAATAAACAGTGA 918 47.39 MELDGLERAPPSMDVMNEEDKTLQCHCQFPSISKPRISNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCSEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGEIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENAIWMLTVFHCFDQYFCLHFEAFQLGMAPVYMVFLRFMGDETDARNYSYSLEVGGNGRKLTWEGNPRSIRDNHKKVRDSHDGLIIHRNMALFFSGGERKELKLRIMGRIWKEQNKQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7696655 7700929 + Cp4.1LG17g10090.1 Cpe17g01016 484334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01016 305 CDD RING-HC_SIAHs 52 90 - -
Cpe17g01016 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 295 IPR008974 GO:0005515
Cpe17g01016 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 12 303 - -
Cpe17g01016 305 SUPERFAMILY RING/U-box 48 94 - -
Cpe17g01016 305 SUPERFAMILY TRAF domain-like 107 298 - -
Cpe17g01016 305 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Cpe17g01016 305 CDD Sina 168 296 - -
Cpe17g01016 305 Coils Coil 303 305 - -
Cpe17g01016 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 97 IPR013083 -
Cpe17g01016 305 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Cpe17g01016 305 PANTHER UBIQUITIN LIGASE SINAT3 12 303 - -
Cpe17g01016 305 Pfam Seven in absentia protein family 96 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe17g01016 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 162 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00039 Cpe-Chr14:210301 Cpe17g01016 Cpe-Chr17:7696655 1.43E-169 dispersed
Cpe17g01016 Cpe-Chr17:7696655 Cpe19g00084 Cpe-Chr19:653947 3.68E-153 dispersed
Cpe12g00474 Cpe-Chr12:4513988 Cpe17g01016 Cpe-Chr17:7696655 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01016 K04506 - csv:101209363 614.379